{ "type": "genome", "identifier": "GCF_900302505.1", "organism": "Pseudoprimorskyibacter insulae", "title": "Pseudoprimorskyibacter insulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900302505.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104630916", "wgs_master": "OMOJ00000000.1", "refseq_category": "reference genome", "taxid": "1695997", "species_taxid": "1695997", "organism_name": "Pseudoprimorskyibacter insulae", "infraspecific_name": "strain=CECT 8871", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/24", "asm_name": "P.insulaeCECT8871_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900302505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/302/505/GCF_900302505.1_P.insulaeCECT8871_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4006290", "genome_size_ungapped": "4006290", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900302505.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3902", "protein_coding_gene_count": "3808", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-24", "dateModified": "2018-04-24", "datePublished": "2018-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoprimorskyibacter insulae" ], "sample_taxid": [ "1695997" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4006290", "Number of Sequences": "28", "Longest Sequences (bp)": "1100942", "N50 (bp)": "350329", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "3835", "Average Protein Length": "316.6", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1320, "total_fragments": 1320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 79.4267, "matched_fragments": 288, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.5261, "matched_fragments": 459, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 78.5132, "matched_fragments": 371, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.385, "matched_fragments": 366, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.3434, "matched_fragments": 365, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium antarcticum", "strain": "strain=SM1211", "accession": "GCA_002760615.1", "taxid": 1206336, "species_taxid": 1206336, "relation_to_type": "type", "validated": true, "ani": 78.1718, "matched_fragments": 378, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 78.1657, "matched_fragments": 339, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, "ani": 78.1182, "matched_fragments": 393, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.1128, "matched_fragments": 469, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita cryptomonadis", "strain": "strain=CL-SK44", "accession": "GCA_002115725.1", "taxid": 505252, "species_taxid": 505252, "relation_to_type": "type", "validated": true, "ani": 78.001, "matched_fragments": 333, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.9598, "matched_fragments": 343, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=CGMCC 1.7081", "accession": "GCA_014653505.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 77.9586, "matched_fragments": 341, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8875, "matched_fragments": 450, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 77.8608, "matched_fragments": 341, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8469, "matched_fragments": 461, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.7891, "matched_fragments": 342, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.7685, "matched_fragments": 336, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium sediminis", "strain": "strain=DSM 29052", "accession": "GCA_900188035.1", "taxid": 1608407, "species_taxid": 1608407, "relation_to_type": "type", "validated": true, "ani": 77.7605, "matched_fragments": 368, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 77.6667, "matched_fragments": 290, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 77.5945, "matched_fragments": 329, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4418, "matched_fragments": 222, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4213, "matched_fragments": 220, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.4075, "matched_fragments": 346, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.39, "matched_fragments": 349, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.3316, "matched_fragments": 256, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900302505.1", "gtdb_species": "s__Pseudoprimorskyibacter insulae", "ani": 100.0, "matched_fragments": 1320, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudoprimorskyibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004799325.1", "gtdb_species": "s__Thalassobius vesicularis", "ani": 78.8761, "matched_fragments": 442, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009857745.1", "gtdb_species": "s__Thalassobius mangrovi", "ani": 78.5286, "matched_fragments": 457, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001458255.1", "gtdb_species": "s__Thalassobius autumnalis", "ani": 78.5254, "matched_fragments": 369, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002285435.1", "gtdb_species": "s__Actibacterium ureilyticum", "ani": 78.4542, "matched_fragments": 431, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377535.1", "gtdb_species": "s__Donghicola mangrovi", "ani": 78.4529, "matched_fragments": 393, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Donghicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.45", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900142665.1", "gtdb_species": "s__Roseovarius pacificus", "ani": 78.3913, "matched_fragments": 364, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002366795.1", "gtdb_species": "s__UBA3069 sp002366795", "ani": 78.1762, "matched_fragments": 394, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA3069", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002760615.1", "gtdb_species": "s__Puniceibacterium antarcticum", "ani": 78.141, "matched_fragments": 376, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Puniceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014637725.1", "gtdb_species": "s__Marivita lacus", "ani": 78.1078, "matched_fragments": 392, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002786325.1", "gtdb_species": "s__Pseudooceanicola_C lipolyticus", "ani": 78.1008, "matched_fragments": 399, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016888515.1", "gtdb_species": "s__Shimia_A biformata", "ani": 78.0416, "matched_fragments": 403, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975705.1", "gtdb_species": "s__Salipiger abyssi", "ani": 78.0124, "matched_fragments": 445, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002115725.1", "gtdb_species": "s__Marivita cryptomonadis", "ani": 77.9844, "matched_fragments": 333, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 31, "status": "-" }, { "accession": "GCF_013032855.1", "gtdb_species": "s__Ruegeria arenilitoris", "ani": 77.9751, "matched_fragments": 342, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.27", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 31, "status": "-" }, { "accession": "GCF_900129345.1", "gtdb_species": "s__Ruegeria intermedia", "ani": 77.9585, "matched_fragments": 388, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017643905.1", "gtdb_species": 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