{ "type": "genome", "identifier": "GCF_900323515.1", "organism": "Acinetobacter stercoris", "title": "Acinetobacter stercoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JLU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900323515.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104715460", "wgs_master": "OOGT00000000.1", "refseq_category": "reference genome", "taxid": "2126983", "species_taxid": "2126983", "organism_name": "Acinetobacter stercoris", "infraspecific_name": "strain=KPC-SM-21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/16", "asm_name": "KPC-SM-21", "asm_submitter": "JLU", "gbrs_paired_asm": "GCA_900323515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/323/515/GCF_900323515.1_KPC-SM-21", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4164616", "genome_size_ungapped": "4164616", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "468", "contig_count": "468", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900323515.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4023", "protein_coding_gene_count": "3843", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-16", "dateModified": "2018-05-16", "datePublished": "2018-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter stercoris" ], "sample_taxid": [ "2126983" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.182 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4164616", "Number of Sequences": "468", "Longest Sequences (bp)": "57368", "N50 (bp)": "15905", "Gap Ratio (%)": "0.007732", "GCcontent (%)": "37.7", "Number of CDSs": "3756", "Average Protein Length": "305.8", "Coding Ratio (%)": "82.7", "Number of rRNAs": "7", "Number of tRNAs": "67", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter stercoris", "strain": "strain=KPC-SM-21", "accession": "GCA_900323515.1", "taxid": 2126983, "species_taxid": 2126983, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1143, "total_fragments": 1156, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 81.4902, "matched_fragments": 605, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 81.4269, "matched_fragments": 608, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 81.3982, "matched_fragments": 598, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.8099, "matched_fragments": 423, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 79.7689, "matched_fragments": 433, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 79.7302, "matched_fragments": 425, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.6503, "matched_fragments": 431, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 79.5829, "matched_fragments": 319, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.4673, "matched_fragments": 376, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3938, "matched_fragments": 325, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 79.3396, "matched_fragments": 342, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.0841, "matched_fragments": 335, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 78.9706, "matched_fragments": 265, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 78.9677, "matched_fragments": 289, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900323515.1", "gtdb_species": "s__Acinetobacter stercoris", "ani": 100.0, "matched_fragments": 1143, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000368565.1", "gtdb_species": "s__Acinetobacter gerneri", "ani": 81.4382, "matched_fragments": 607, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015218165.1", "gtdb_species": "s__Acinetobacter piscicola_A", "ani": 79.8799, "matched_fragments": 420, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002233755.1", "gtdb_species": "s__Acinetobacter piscicola", "ani": 79.8769, "matched_fragments": 408, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902753875.1", "gtdb_species": "s__Acinetobacter bouvetii_A", "ani": 79.8296, "matched_fragments": 336, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368145.1", "gtdb_species": "s__Acinetobacter guillouiae", "ani": 79.8099, "matched_fragments": 423, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 79.7881, "matched_fragments": 431, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003024515.2", "gtdb_species": "s__Acinetobacter sichuanensis", "ani": 79.7551, "matched_fragments": 423, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000214135.1", "gtdb_species": "s__Acinetobacter sp000214135", "ani": 79.6688, "matched_fragments": 403, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016508585.1", "gtdb_species": "s__Acinetobacter baumannii_B", "ani": 79.6491, "matched_fragments": 402, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_902809855.1", "gtdb_species": "s__Acinetobacter sp902809855", "ani": 79.5872, "matched_fragments": 417, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 79.5593, "matched_fragments": 431, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_009939195.1", "gtdb_species": "s__Acinetobacter kanungonis", "ani": 79.5508, "matched_fragments": 321, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.15", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003268395.1", "gtdb_species": "s__Acinetobacter sp003268395", "ani": 79.5024, "matched_fragments": 420, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001307195.1", "gtdb_species": "s__Acinetobacter equi", "ani": 79.4484, "matched_fragments": 334, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009912575.1", "gtdb_species": "s__Acinetobacter bereziniae_A", "ani": 79.3204, "matched_fragments": 404, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900095025.1", "gtdb_species": "s__Acinetobacter albensis", "ani": 79.0916, "matched_fragments": 321, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000368265.1", "gtdb_species": "s__Acinetobacter sp000368265", "ani": 78.9646, "matched_fragments": 248, "total_fragments": 1156, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "stercoris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }