{ "type": "genome", "identifier": "GCF_900444665.1", "organism": "Acholeplasma oculi", "title": "Acholeplasma oculi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900444665.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104224792", "wgs_master": "UFRU00000000.1", "refseq_category": "reference genome", "taxid": "35623", "species_taxid": "35623", "organism_name": "Acholeplasma oculi", "infraspecific_name": "strain=NCTC10150", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/07", "asm_name": "57752_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900444665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/444/665/GCF_900444665.1_57752_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1600576", "genome_size_ungapped": "1600576", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900444665.1-RS_2024_09_05", "annotation_date": "2024-09-05", "total_gene_count": "1519", "protein_coding_gene_count": "1467", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-07", "dateModified": "2018-08-07", "datePublished": "2018-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Acholeplasma oculi" ], "sample_taxid": [ "35623" ], "sample_host_organism": [ "Goat" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.441 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1600576", "Number of Sequences": "2", "Longest Sequences (bp)": "1587119", "N50 (bp)": "1587119", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.3", "Number of CDSs": "1486", "Average Protein Length": "329.2", "Coding Ratio (%)": "91.7", "Number of rRNAs": "6", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acholeplasma oculi", "strain": "strain=NCTC10150", "accession": "GCA_900444665.1", "taxid": 35623, "species_taxid": 35623, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 533, "total_fragments": 533, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acholeplasma oculi", "strain": "strain=ATCC 27350", "accession": "GCA_900166985.1", "taxid": 35623, "species_taxid": 35623, "relation_to_type": "type", "validated": true, "ani": 99.992, "matched_fragments": 523, "total_fragments": 533, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acholeplasma granularum", "strain": "strain=ATCC 19168", "accession": "GCA_000526235.1", "taxid": 264635, "species_taxid": 264635, "relation_to_type": "type", "validated": true, "ani": 78.9822, "matched_fragments": 166, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma laidlawii", "strain": "strain=PG-8A", "accession": "GCA_000018785.1", "taxid": 2148, "species_taxid": 2148, "relation_to_type": "type", "validated": true, "ani": 78.98, "matched_fragments": 187, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma laidlawii", "strain": "strain=NCTC10116", "accession": "GCA_900476025.1", "taxid": 2148, "species_taxid": 2148, "relation_to_type": "type", "validated": true, "ani": 78.7395, "matched_fragments": 184, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma laidlawii", "strain": "strain=DSM 23060", "accession": "GCA_003385765.1", "taxid": 2148, "species_taxid": 2148, "relation_to_type": "type", "validated": true, "ani": 78.5481, "matched_fragments": 178, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma hippikon", "strain": "strain=NCTC10172", "accession": "GCA_900660755.1", "taxid": 264636, "species_taxid": 264636, "relation_to_type": "type", "validated": true, "ani": 78.4271, "matched_fragments": 121, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma hippikon", "strain": "strain=ATCC 29725", "accession": "GCA_000702765.1", "taxid": 264636, "species_taxid": 264636, "relation_to_type": "type", "validated": true, "ani": 78.2343, "matched_fragments": 122, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma equirhinis", "strain": "strain=N93", "accession": "GCA_017052655.1", "taxid": 555393, "species_taxid": 555393, "relation_to_type": "type", "validated": true, "ani": 78.195, "matched_fragments": 124, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acholeplasma equifetale", "strain": "strain=ATCC 29724", "accession": "GCA_000687735.1", "taxid": 264634, "species_taxid": 264634, "relation_to_type": "type", "validated": true, "ani": 77.9119, "matched_fragments": 113, "total_fragments": 533, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900166985.1", "gtdb_species": "s__Acholeplasma oculi", "ani": 99.9916, "matched_fragments": 524, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002399815.1", "gtdb_species": "s__Acholeplasma sp002399815", "ani": 79.199, "matched_fragments": 192, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015709225.1", "gtdb_species": "s__Acholeplasma laidlawii_A", "ani": 79.0752, "matched_fragments": 160, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000526235.1", "gtdb_species": "s__Acholeplasma granularum", "ani": 78.9822, "matched_fragments": 166, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000018785.1", "gtdb_species": "s__Acholeplasma laidlawii", "ani": 78.8706, "matched_fragments": 187, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "98.26", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_900660755.1", "gtdb_species": "s__Acholeplasma hippikon", "ani": 78.3324, "matched_fragments": 118, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017052655.1", "gtdb_species": "s__Acholeplasma equirhinis", "ani": 78.2249, "matched_fragments": 123, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000687735.1", "gtdb_species": "s__Acholeplasma equifetale", "ani": 77.9192, "matched_fragments": 114, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900660745.1", "gtdb_species": "s__Acholeplasma_A axanthum", "ani": 77.5611, "matched_fragments": 52, "total_fragments": 533, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Acholeplasmataceae;g__Acholeplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 32.333, "optimum_ph": null, "genome_size": 1587120.0, "gc_content": 31.3, "coding_genes": 1444.667, "rRNA16S_genes": 2.0, "tRNA_genes": 34.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.571, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.428, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acholeplasma", "oculi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }