{
    "type": "genome",
    "identifier": "GCF_900445115.1",
    "organism": "Aeromonas salmonicida",
    "title": "Aeromonas salmonicida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900445115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4530645",
        "wgs_master": "UAPT00000000.1",
        "refseq_category": "na",
        "taxid": "645",
        "species_taxid": "645",
        "organism_name": "Aeromonas salmonicida",
        "infraspecific_name": "strain=NCTC12959",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/29",
        "asm_name": "52121_E02",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900445115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/115/GCF_900445115.1_52121_E02",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4934557",
        "genome_size_ungapped": "4934557",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900445115.1-RS_2024_04_01",
        "annotation_date": "2024-04-01",
        "total_gene_count": "4741",
        "protein_coding_gene_count": "4354",
        "non_coding_gene_count": "146",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-29",
    "dateModified": "2018-06-29",
    "datePublished": "2018-06-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aeromonas salmonicida"
        ],
        "sample_taxid": [
            "645"
        ],
        "sample_host_organism": [
            "Fish (Salmon)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.386 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4934557",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "2849290",
        "N50 (bp)": "2849290",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.3",
        "Number of CDSs": "4814",
        "Average Protein Length": "294.4",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "28",
        "Number of tRNAs": "117",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aeromonas salmonicida",
                "strain": "strain=NCTC12959",
                "accession": "GCA_900445115.1",
                "taxid": 645,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1634,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
                "strain": "strain=CIP 103209",
                "accession": "GCA_000820065.1",
                "taxid": 29491,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9318,
                "matched_fragments": 1506,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. salmonicida",
                "strain": "strain=ATCC 33658",
                "accession": "GCA_001643305.1",
                "taxid": 29491,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9119,
                "matched_fragments": 1514,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. masoucida",
                "strain": "strain=NBRC 13784",
                "accession": "GCA_000647955.1",
                "taxid": 197700,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6761,
                "matched_fragments": 1337,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromonas salmonicida subsp. pectinolytica",
                "strain": "strain=34mel",
                "accession": "GCA_000447435.2",
                "taxid": 96473,
                "species_taxid": 645,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9815,
                "matched_fragments": 1306,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9869,
                "matched_fragments": 130,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella jiangmenensis",
                "strain": "strain=JM162201",
                "accession": "GCA_018596335.1",
                "taxid": 2837387,
                "species_taxid": 2837387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6723,
                "matched_fragments": 121,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=JCM 5962",
                "accession": "GCA_022496575.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1857,
                "matched_fragments": 124,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0777,
                "matched_fragments": 144,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0357,
                "matched_fragments": 136,
                "total_fragments": 1639,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001643305.1",
                "gtdb_species": "s__Aeromonas salmonicida",
                "ani": 99.9119,
                "matched_fragments": 1514,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 74,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000820005.1",
                "gtdb_species": "s__Aeromonas piscicola",
                "ani": 92.022,
                "matched_fragments": 1324,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.5033,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000819745.1",
                "gtdb_species": "s__Aeromonas bestiarum",
                "ani": 91.261,
                "matched_fragments": 1296,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.5033,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000820025.1",
                "gtdb_species": "s__Aeromonas popoffii",
                "ani": 89.9463,
                "matched_fragments": 1201,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900637545.1",
                "gtdb_species": "s__Aeromonas encheleia",
                "ani": 87.1934,
                "matched_fragments": 1204,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000764655.1",
                "gtdb_species": "s__Aeromonas aquatica",
                "ani": 86.4453,
                "matched_fragments": 1147,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000764645.1",
                "gtdb_species": "s__Aeromonas finlandensis",
                "ani": 86.233,
                "matched_fragments": 1055,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000388115.1",
                "gtdb_species": "s__Aeromonas molluscorum",
                "ani": 83.9152,
                "matched_fragments": 935,
                "total_fragments": 1639,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.301,
        "doubling_h": 0.912,
        "growth_tmp": 27.6,
        "optimum_tmp": 18.4,
        "optimum_ph": 7.25,
        "genome_size": 4833896.632,
        "gc_content": 57.448,
        "coding_genes": 4278.3,
        "rRNA16S_genes": 9.5,
        "tRNA_genes": 118.333,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.75,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aeromonas",
        "salmonicida"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}