{ "type": "genome", "identifier": "GCF_900445465.1", "organism": "Lysinibacillus sphaericus", "title": "Lysinibacillus sphaericus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900445465.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4076708", "wgs_master": "UFSZ00000000.1", "refseq_category": "na", "taxid": "1421", "species_taxid": "1421", "organism_name": "Lysinibacillus sphaericus", "infraspecific_name": "strain=NCTC10338", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/08", "asm_name": "49386_F02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900445465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/465/GCF_900445465.1_49386_F02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4674362", "genome_size_ungapped": "4674362", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900445465.1-RS_2024_08_16", "annotation_date": "2024-08-16", "total_gene_count": "4635", "protein_coding_gene_count": "4430", "non_coding_gene_count": "150", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-08", "dateModified": "2018-08-08", "datePublished": "2018-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus sphaericus" ], "sample_taxid": [ "1421" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4674362", "Number of Sequences": "3", "Longest Sequences (bp)": "4642187", "N50 (bp)": "4642187", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "4589", "Average Protein Length": "284.2", "Coding Ratio (%)": "83.7", "Number of rRNAs": "34", "Number of tRNAs": "111", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=NCTC10338", "accession": "GCA_900445465.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=DSM 28", "accession": "GCA_002982115.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9998, "matched_fragments": 1547, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=KCTC 3346", "accession": "GCA_000427235.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9668, "matched_fragments": 1485, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=NRRL B-23268", "accession": "GCA_005217555.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9516, "matched_fragments": 1473, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=NBRC 15095", "accession": "GCA_006539805.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 99.942, "matched_fragments": 1442, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacillus cavernae", "strain": "strain=SYSU K30005", "accession": "GCA_009724685.1", "taxid": 2666135, "species_taxid": 2666135, "relation_to_type": "type", "validated": true, "ani": 81.5895, "matched_fragments": 753, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus contaminans", "strain": "strain=DSM 25560", "accession": "GCA_001278945.1", "taxid": 1293441, "species_taxid": 1293441, "relation_to_type": "type", "validated": true, "ani": 80.4022, "matched_fragments": 598, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenisporosarcina cavernae", "strain": "strain=K2R23-3", "accession": "GCA_003595195.1", "taxid": 2320858, "species_taxid": 2320858, "relation_to_type": "type", "validated": true, "ani": 80.2143, "matched_fragments": 98, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 79.8295, "matched_fragments": 70, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002982115.1", "gtdb_species": "s__Lysinibacillus sphaericus", "ani": 99.9998, "matched_fragments": 1547, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 96.9114, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_003049665.1", "gtdb_species": "s__Lysinibacillus mangiferihumi", "ani": 96.847, "matched_fragments": 1321, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 96.9114, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001728805.1", "gtdb_species": "s__Lysinibacillus sphaericus_D", "ani": 96.0739, "matched_fragments": 1329, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 96.1498, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015999545.1", "gtdb_species": "s__Lysinibacillus sp002340205", "ani": 86.39, "matched_fragments": 1160, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_007362955.1", "gtdb_species": "s__Lysinibacillus fusiformis_E", "ani": 82.6517, "matched_fragments": 905, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000392615.1", "gtdb_species": "s__Lysinibacillus sphaericus_B", "ani": 82.4453, "matched_fragments": 878, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016638705.1", "gtdb_species": "s__Lysinibacillus sp001278875", "ani": 82.3919, "matched_fragments": 797, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001275675.1", "gtdb_species": "s__Lysinibacillus sp001275675", "ani": 81.848, "matched_fragments": 835, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 33.0, "optimum_tmp": 30.0, "optimum_ph": 7.361, "genome_size": 4648633.444, "gc_content": 37.003, "coding_genes": 4347.571, "rRNA16S_genes": 10.5, "tRNA_genes": 97.833, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysinibacillus", "sphaericus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }