{ "type": "genome", "identifier": "GCF_900445485.1", "organism": "Priestia megaterium", "title": "Priestia megaterium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900445485.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4076709", "wgs_master": "UFSS00000000.1", "refseq_category": "na", "taxid": "1404", "species_taxid": "1404", "organism_name": "Priestia megaterium", "infraspecific_name": "strain=NCTC10342", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/08", "asm_name": "49386_G02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900445485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/485/GCF_900445485.1_49386_G02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5782255", "genome_size_ungapped": "5782255", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900445485.1-RS_2024_08_16", "annotation_date": "2024-08-16", "total_gene_count": "6069", "protein_coding_gene_count": "5791", "non_coding_gene_count": "173", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-08", "dateModified": "2018-08-08", "datePublished": "2018-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Priestia megaterium" ], "sample_taxid": [ "1404" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5782255", "Number of Sequences": "8", "Longest Sequences (bp)": "4542023", "N50 (bp)": "4542023", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.8", "Number of CDSs": "6015", "Average Protein Length": "263.4", "Coding Ratio (%)": "82.2", "Number of rRNAs": "41", "Number of tRNAs": "122", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1921, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_000832985.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 99.9988, "matched_fragments": 1902, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_006094495.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 99.9966, "matched_fragments": 1900, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_017086525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 1902, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=NBRC 15308", "accession": "GCA_001591525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 99.9849, "matched_fragments": 1802, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_900113355.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "suspected-type", "validated": true, "ani": 97.8078, "matched_fragments": 1635, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Priestia aryabhattai", "strain": "strain=B8W22", "accession": "GCA_000956595.1", "taxid": 412384, "species_taxid": 412384, "relation_to_type": "type", "validated": true, "ani": 95.3787, "matched_fragments": 1520, "total_fragments": 1922, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mangrovibacillus cuniculi", "strain": "strain=R1DC41", "accession": "GCA_015482585.1", "taxid": 2593652, "species_taxid": 2593652, "relation_to_type": "type", "validated": true, "ani": 79.2336, "matched_fragments": 78, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus vallismortis", "strain": "strain=DV1-F-3", "accession": "GCA_000245315.1", "taxid": 72361, "species_taxid": 72361, "relation_to_type": "type", "validated": true, "ani": 78.595, "matched_fragments": 69, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus iocasae", "strain": "strain=DSM 104297", "accession": "GCA_016909075.1", "taxid": 2291674, "species_taxid": 2291674, "relation_to_type": "type", "validated": true, "ani": 78.4223, "matched_fragments": 278, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia endophyticus", "strain": "strain=RG28", "accession": "GCA_017814275.1", "taxid": 2820819, "species_taxid": 2820819, "relation_to_type": "type", "validated": true, "ani": 77.33, "matched_fragments": 95, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia luciferensis", "strain": "strain=DSM 18845", "accession": "GCA_002156865.1", "taxid": 178774, "species_taxid": 178774, "relation_to_type": "type", "validated": true, "ani": 77.1964, "matched_fragments": 112, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus arseniciselenatis", "strain": "strain=DSM 15340", "accession": "GCA_001865995.1", "taxid": 85682, "species_taxid": 85682, "relation_to_type": "type", "validated": true, "ani": 76.7639, "matched_fragments": 65, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus cucumis", "strain": "strain=DSM 101566", "accession": "GCA_016908975.1", "taxid": 1740721, "species_taxid": 1740721, "relation_to_type": "type", "validated": true, "ani": 76.7312, "matched_fragments": 121, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus suaedaesalsae", "strain": "strain=RD4P76", "accession": "GCA_016890225.1", "taxid": 2810349, "species_taxid": 2810349, "relation_to_type": "type", "validated": true, "ani": 76.5647, "matched_fragments": 93, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000832985.1", "gtdb_species": "s__Priestia megaterium", "ani": 99.9987, "matched_fragments": 1903, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.5311, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 151, "status": "conclusive" }, { "accession": "GCF_000956595.1", "gtdb_species": "s__Priestia aryabhattai", "ani": 95.3543, "matched_fragments": 1522, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 96.022, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_009497655.1", "gtdb_species": "s__Priestia megaterium_A", "ani": 95.2151, "matched_fragments": 1545, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 96.022, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_008180335.1", "gtdb_species": "s__Priestia megaterium_B", "ani": 79.6917, "matched_fragments": 526, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591565.1", "gtdb_species": "s__Priestia flexa", "ani": 79.5569, "matched_fragments": 421, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_002265635.1", "gtdb_species": "s__Priestia aryabhattai_A", "ani": 79.3442, "matched_fragments": 463, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016909075.1", "gtdb_species": "s__Priestia iocasae", "ani": 78.4223, "matched_fragments": 278, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591585.1", "gtdb_species": "s__Niallia circulans", "ani": 77.0156, "matched_fragments": 96, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Niallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_900116295.1", "gtdb_species": "s__Bacillus_A sp900116295", "ani": 76.9582, "matched_fragments": 146, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003570725.1", "gtdb_species": "s__Peribacillus asahii", "ani": 76.9117, "matched_fragments": 131, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001509555.1", "gtdb_species": "s__Cytobacillus sp001509555", "ani": 76.7484, "matched_fragments": 98, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Priestia", "megaterium" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }