{ "type": "genome", "identifier": "GCF_900445565.1", "organism": "Bacteroides eggerthii", "title": "Bacteroides eggerthii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900445565.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4063021", "wgs_master": "UFSX00000000.1", "refseq_category": "na", "taxid": "28111", "species_taxid": "28111", "organism_name": "Bacteroides eggerthii", "infraspecific_name": "strain=NCTC11155", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/08", "asm_name": "48853_E02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900445565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/565/GCF_900445565.1_48853_E02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4338066", "genome_size_ungapped": "4338066", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900445565.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "3619", "protein_coding_gene_count": "3470", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-08", "dateModified": "2018-08-08", "datePublished": "2018-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroides eggerthii" ], "sample_taxid": [ "28111" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Virginia (State)" ], "sample_host_location_id": [], "data_size": "1.233 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4338066", "Number of Sequences": "6", "Longest Sequences (bp)": "2276852", "N50 (bp)": "2276852", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "3519", "Average Protein Length": "364.5", "Coding Ratio (%)": "88.7", "Number of rRNAs": "12", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides eggerthii", "strain": "strain=NCTC11155", "accession": "GCA_900445565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1434, "total_fragments": 1442, "ani_threshold": 95, 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