{ "type": "genome", "identifier": "GCF_900445595.1", "organism": "Bacteroides thetaiotaomicron", "title": "Bacteroides thetaiotaomicron", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900445595.1", "bioproject": "PRJNA224116", "biosample": "SAMEA44542918", "wgs_master": "UAQJ00000000.1", "refseq_category": "na", "taxid": "818", "species_taxid": "818", "organism_name": "Bacteroides thetaiotaomicron", "infraspecific_name": "strain=NCTC10582", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/30", "asm_name": "51334_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900445595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/595/GCF_900445595.1_51334_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6404217", "genome_size_ungapped": "6404217", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900445595.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "4993", "protein_coding_gene_count": "4766", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-30", "dateModified": "2018-06-30", "datePublished": "2018-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroides thetaiotaomicron" ], "sample_taxid": [ "818" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.820 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6404217", "Number of Sequences": "33", "Longest Sequences (bp)": "876535", "N50 (bp)": "680099", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "4880", "Average Protein Length": "385.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "14", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=NCTC10582", "accession": "GCA_900445595.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2113, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI-5482", "accession": "GCA_002959695.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 99.9959, "matched_fragments": 2078, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI 5482", "accession": "GCA_022453665.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 99.9951, "matched_fragments": 2072, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI-5482", "accession": "GCA_000011065.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 99.991, "matched_fragments": 2067, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI-5482", "accession": "GCA_020179495.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 99.9669, "matched_fragments": 2022, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides caecimuris", "strain": "strain=I48", "accession": "GCA_023277905.1", "taxid": 1796613, "species_taxid": 1796613, "relation_to_type": "type", "validated": true, "ani": 82.3504, "matched_fragments": 751, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_025146315.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0993, "matched_fragments": 806, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=FDAARGOS_1516", "accession": "GCA_020149745.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0261, "matched_fragments": 926, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_025146775.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9384, "matched_fragments": 946, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7303, "matched_fragments": 328, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercorirosoris", "strain": "strain=JCM 17103", "accession": "GCA_000614165.1", "taxid": 871324, "species_taxid": 871324, "relation_to_type": "type", "validated": true, "ani": 78.4235, "matched_fragments": 396, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.55, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_000011065.1", "gtdb_species": "s__Bacteroides thetaiotaomicron", "ani": 99.991, "matched_fragments": 2067, "total_fragments": 2117, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.75", "num_clustered_genomes": 121, "status": "conclusive" }, { "accession": "GCF_900106755.1", "gtdb_species": "s__Bacteroides faecis", "ani": 89.2547, "matched_fragments": 1399, "total_fragments": 2117, "gtdb_taxonomy": 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