{ "type": "genome", "identifier": "GCF_900445785.1", "organism": "Bordetella parapertussis", "title": "Bordetella parapertussis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900445785.1", "bioproject": "PRJNA224116", "biosample": "SAMEA24553918", "wgs_master": "UFUC00000000.1", "refseq_category": "na", "taxid": "519", "species_taxid": "519", "organism_name": "Bordetella parapertussis", "infraspecific_name": "strain=NCTC5952", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/08", "asm_name": "52451_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900445785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/445/785/GCF_900445785.1_52451_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4775492", "genome_size_ungapped": "4775492", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900445785.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "4518", "protein_coding_gene_count": "4206", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-08", "dateModified": "2018-08-08", "datePublished": "2018-08-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Bordetella parapertussis" ], "sample_taxid": [ "519" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.291 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4775492", "Number of Sequences": "2", "Longest Sequences (bp)": "4034469", "N50 (bp)": "4034469", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "4569", "Average Protein Length": "316.8", "Coding Ratio (%)": "90.9", "Number of rRNAs": "9", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bordetella parapertussis", "strain": "strain=NCTC5952", "accession": "GCA_900445785.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1591, "total_fragments": 1591, "ani_threshold": 95, "status": "inconclusive" }, { 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"GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 98.1444, "matched_fragments": 1223, "total_fragments": 1591, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 83.2757, "matched_fragments": 949, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 81.6961, "matched_fragments": 915, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, 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