# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_19	LOCUS_00180	sequence1:8439..8759(+)	frameshift		8627	WP_015039685.1	phage lysozyme	46.2	26.8	67.3
MGA_20	LOCUS_00190	sequence1:8695..8979(+)	frameshift		8627	WP_003813392.1	lysozyme	95.7	51.6	57.9
MGA_29	LOCUS_00280	sequence1:13745..14656(+)	frameshift		14488	WP_010929890.1	amidohydrolase family protein	76.6	72.5	90.9
MGA_30	LOCUS_00290	sequence1:14592..14759(+)	frameshift		14491	WP_015064690.1	amidohydrolase family protein	100.0	17.2	89.1
MGA_62	LOCUS_00590	sequence2:15741..16595(-)	partial			WP_000105143.1	exodeoxyribonuclease VIII	94.0	30.5	35.9
MGA_65	LOCUS_00620	sequence2:17158..17916(-)	partial			WP_001056879.1	phage antirepressor N-terminal domain-containing protein	41.7	55.6	58.1
MGA_73	LOCUS_00700	sequence2:20809..21333(-)	partial			WP_010938420.1	OB-fold putative lipoprotein	55.7	46.1	38.1
MGA_75	LOCUS_00720	sequence2:21540..22247(-)	partial			WP_015039657.1	phage protein	31.5	49.3	50.0
MGA_92	LOCUS_00890	sequence2:29421..29903(+)	partial			WP_005693952.1	terminase small subunit	71.9	68.4	40.2
MGA_96	LOCUS_00930	sequence2:33563..34813(+)	partial			WP_219346999.1	DUF2213 domain-containing protein	54.1	58.2	35.1
MGA_98	LOCUS_00950	sequence2:35299..36378(+)	partial			WP_013098046.1	DUF2184 domain-containing protein	72.4	75.9	28.0
MGA_182	LOCUS_01780	sequence3:82823..83674(+)	partial			WP_003084914.1	YgcG family protein	58.0	54.5	56.5
MGA_254	LOCUS_02500	sequence3:156775..159462(-)	partial			WP_023995112.1	autotransporter SphB2	80.6	68.2	40.2
MGA_261	LOCUS_02570	sequence3:166301..167272(+)	partial			WP_041443441.1	electron transfer flavoprotein subunit alpha/FixB family protein	74.6	75.5	34.3
MGA_264	LOCUS_02600	sequence3:168634..169755(-)	partial			WP_010931675.1	MmgE/PrpD family protein	93.3	74.0	30.1
MGA_269	LOCUS_02650	sequence3:174061..174873(+)	partial			WP_064252482.1	aspartate/glutamate racemase family protein	62.2	64.3	30.0
MGA_281	LOCUS_02770	sequence3:190481..190621(-)	frameshift		190649	WP_002212064.1	MFS transporter	93.5	10.5	51.2
MGA_282	LOCUS_02780	sequence3:190990..192225(+)	frameshift		191044,192004	WP_015063696.1	IlvD/Edd family dehydratase	82.0	57.2	81.0
MGA_283	LOCUS_02790	sequence3:192159..192749(+)	frameshift		192006	WP_015063696.1	IlvD/Edd family dehydratase	98.5	33.3	79.3
MGA_304	LOCUS_03000	sequence3:211304..211450(+)	partial			WP_003815365.1	ATP synthase subunit I	100.0	45.3	60.4
MGA_333	LOCUS_03290	sequence3:241913..242431(-)	frameshift,internal_stop_codon	241913..241915(-)	241809,241846	WP_172607919.1	c-type cytochrome	70.9	43.8	59.1
MGA_334	LOCUS_03300	sequence3:242919..243689(-)	partial			WP_015063734.1	methyl-accepting chemotaxis protein	100.0	42.4	24.0
MGA_364	LOCUS_03600	sequence3:273169..273606(-)	partial			WP_015064907.1	YraN family protein	88.3	72.3	46.6
MGA_445	LOCUS_04400	sequence3:355837..356985(+)	partial			WP_015064970.1	aromatic-ring-hydroxylating dioxygenase subunit alpha	50.0	45.0	33.0
MGA_446	LOCUS_04410	sequence3:356988..357635(+)	partial			WP_000516588.1	acetyltransferase	44.2	46.1	33.7
MGA_480	LOCUS_04750	sequence3:395551..396267(+)	partial			WP_003815043.1	A24 family peptidase	77.7	72.4	42.1
MGA_541	LOCUS_05360	sequence3:458302..459063(-)	partial			WP_015040544.1	histone H1-like DNA-binding protein	10.3	13.9	92.3
MGA_610	LOCUS_06050	sequence3:534447..535586(-)	partial			WP_010931418.1	cell envelope integrity protein TolA	33.0	38.6	88.8
MGA_675	LOCUS_06690	sequence3:609202..609771(+)	partial			WP_010918447.1	FecR family protein	95.8	51.1	26.4
MGA_679	LOCUS_06730	sequence3:613632..616337(-)	partial			WP_001315515.1	ECSE_1600 family autotransporter	96.4	45.1	26.8
MGA_683	LOCUS_06770	sequence3:619771..620049(+)	partial			WP_015040038.1	hypothetical protein	54.3	71.4	62.0
MGA_700	LOCUS_06940	sequence3:637747..641796(-)	partial			WP_054181051.1	hemagglutinin repeat-containing protein	72.3	32.3	24.2
MGA_706	LOCUS_07000	sequence3:647577..651566(+)	partial			WP_015704132.1	hemagglutinin repeat-containing protein	83.2	34.0	23.2
MGA_711	LOCUS_07050	sequence3:657371..657676(+)	frameshift		657532	WP_010974437.1	MacB family efflux pump subunit	53.5	8.3	68.5
MGA_712	LOCUS_07060	sequence3:657595..659010(+)	frameshift		659122,657532,658999	WP_050129821.1	MacB family efflux pump subunit	99.4	71.1	60.1
MGA_713	LOCUS_07070	sequence3:659010..659132(+)	frameshift		659121,658998	WP_002211351.1	macrolide ABC transporter ATP-binding protein/permease MacB	92.5	5.7	91.9
MGA_714	LOCUS_07080	sequence3:659141..659338(+)	frameshift		659121,658998	WP_011071115.1	MacB family efflux pump subunit	92.3	9.0	70.0
MGA_731	LOCUS_07250	sequence3:680611..680964(-)	partial			WP_000756548.1	acid-activated periplasmic chaperone HdeA	59.8	63.6	50.0
MGA_788	LOCUS_07820	sequence3:736996..737850(-)	partial			WP_000105143.1	exodeoxyribonuclease VIII	94.0	30.5	35.9
MGA_791	LOCUS_07850	sequence3:738413..739171(-)	partial			WP_001056879.1	phage antirepressor N-terminal domain-containing protein	41.7	55.6	58.1
MGA_806	LOCUS_08000	sequence3:746974..747765(+)	partial			WP_015063594.1	helix-turn-helix domain-containing protein	49.4	47.5	40.8
MGA_811	LOCUS_08050	sequence3:750077..750622(+)	partial			WP_001109019.1	Rha family transcriptional regulator	74.0	74.3	44.9
MGA_814	LOCUS_08080	sequence3:751690..753285(+)	partial			WP_001300443.1	PBSX family phage terminase large subunit	45.6	52.7	36.0
MGA_825	LOCUS_08190	sequence3:760475..761956(+)	partial			WP_000046938.1	DUF3383 family protein	57.4	74.3	58.5
MGA_828	LOCUS_08220	sequence3:762993..764672(+)	partial			WP_000990884.1	hypothetical protein	45.1	39.1	43.2
MGA_869	LOCUS_08630	sequence3:803521..803679(+)	partial			WP_015065060.1	hypothetical protein	94.2	60.0	57.1
MGA_906	LOCUS_09000	sequence3:848545..849162(-)	partial			WP_003814021.1	GGDEF domain-containing protein	82.4	68.9	53.8
MGA_938	LOCUS_09310	sequence3:879836..881221(+)	partial			WP_037393325.1	polysaccharide biosynthesis tyrosine autokinase	97.4	60.7	20.1
MGA_940	LOCUS_09330	sequence3:882348..883589(+)	partial			WP_011090300.1	O-antigen ligase	75.5	66.9	21.8
MGA_950	LOCUS_09430	sequence3:894761..895855(-)	partial			WP_039183945.1	polysaccharide biosynthesis/export family protein	57.7	50.4	32.3
MGA_957	LOCUS_09500	sequence3:902797..903564(+)	partial			WP_011103389.1	cellulose biosynthesis protein BcsQ	92.9	61.9	37.7
MGA_962	LOCUS_09550	sequence3:911486..912325(+)	frameshift		912271	WP_046463740.1	cellulose biosynthesis protein BcsC	98.9	21.0	39.7
MGA_963	LOCUS_09560	sequence3:912345..913409(+)	frameshift		912274,913298	WP_176994102.1	cellulose biosynthesis protein BcsC	88.7	20.5	36.0
MGA_964	LOCUS_09570	sequence3:913409..915505(+)	frameshift		913298	WP_046463740.1	cellulose biosynthesis protein BcsC	98.3	50.5	44.8
MGA_971	LOCUS_09640	sequence3:921874..922635(+)	partial			WP_005174157.1	amino acid permease	39.9	19.9	77.7
MGA_982	LOCUS_09750	sequence3:934275..935414(+)	partial			WP_010942717.1	S8 family peptidase	87.1	61.2	30.1
MGA_986	LOCUS_09790	sequence3:939315..939815(+)	partial			WP_003809659.1	carbonic anhydrase	94.6	65.9	48.1
MGA_1049	LOCUS_10420	sequence3:1006258..1007475(-)	partial			WP_015039390.1	collagen-like triple helix repeat-containing protein	66.7	52.5	44.1
MGA_1050	LOCUS_10430	sequence3:1007748..1008707(-)	partial			WP_015064150.1	ShlB/FhaC/HecB family hemolysin secretion/activation protein	99.7	55.6	65.4
MGA_1054	LOCUS_10470	sequence3:1010907..1011260(+)	partial			WP_010930682.1	pilus assembly protein N-terminal domain-containing protein	100.0	26.1	84.6
MGA_1056	LOCUS_10490	sequence3:1012602..1013042(+)	frameshift		1012946	WP_015039395.1	CpaF family protein	78.8	25.3	69.6
MGA_1057	LOCUS_10500	sequence3:1012964..1013422(+)	frameshift		1012946,1013414,1013423	WP_003810179.1	CpaF family protein	98.7	33.3	81.3
MGA_1058	LOCUS_10510	sequence3:1013490..1013969(+)	frameshift		1013413,1013422	WP_003810179.1	CpaF family protein	100.0	34.4	80.2
MGA_1060	LOCUS_10530	sequence3:1015112..1015624(+)	partial			WP_015064148.1	tetratricopeptide repeat protein	90.0	55.0	48.8
MGA_1061	LOCUS_10540	sequence3:1015733..1016035(+)	partial			WP_015064147.1	DUF3613 domain-containing protein	96.0	74.8	48.6
MGA_1062	LOCUS_10550	sequence3:1016062..1016838(+)	partial			WP_003820229.1	sigma-54 dependent transcriptional regulator	32.6	18.1	82.1
MGA_1067	LOCUS_10600	sequence3:1020539..1021108(+)	frameshift,internal_stop_codon	1021106..1021108(+)	1020618	WP_015040259.1	porin	88.4	46.4	32.1
MGA_1077	LOCUS_10700	sequence3:1032727..1033377(-)	partial			WP_011674956.1	YoaK family protein	27.3	26.7	46.7
MGA_1080	LOCUS_10730	sequence3:1038665..1039186(+)	internal_stop_codon	1038590..1038592(+)		WP_003810205.1	3'-5' exonuclease	87.3	61.1	64.9
MGA_1089	LOCUS_10810	sequence3:1053851..1054132(-)	partial			WP_003810229.1	YchJ family metal-binding protein	96.8	67.7	62.2
MGA_1100	LOCUS_10920	sequence3:1064688..1065164(-)	partial			WP_033840666.1	HU family DNA-binding protein	71.5	72.5	87.6
MGA_1135	LOCUS_11270	sequence3:1102926..1105121(+)	frameshift,internal_stop_codon	1105119..1105121(+)	1105119,1105124,1105076,1105127,1105085,1103727	WP_104543246.1	autotransporter-associated beta strand repeat-containing protein	99.0	20.9	32.5
MGA_1152	LOCUS_11440	sequence3:1123712..1123897(+)	partial			WP_003810433.1	oxidoreductase-like domain-containing protein	73.8	62.5	64.4
MGA_1156	LOCUS_11480	sequence3:1126634..1126873(+)	partial			WP_003810443.1	DUF3820 family protein	74.7	81.9	86.4
MGA_1229	LOCUS_12200	sequence3:1209683..1210681(+)	partial			WP_015040084.1	hypothetical protein	17.8	21.7	40.7
MGA_1260	LOCUS_12510	sequence3:1245861..1246715(-)	partial			WP_000105143.1	exodeoxyribonuclease VIII	94.0	30.5	35.9
MGA_1263	LOCUS_12540	sequence3:1247278..1248024(-)	partial			WP_002211704.1	Bro-N domain-containing protein	60.5	42.7	54.7
MGA_1287	LOCUS_12780	sequence3:1261467..1261973(+)	partial			WP_001109019.1	Rha family transcriptional regulator	79.8	74.3	47.1
MGA_1289	LOCUS_12800	sequence3:1262454..1262888(+)	partial			WP_005693952.1	terminase small subunit	79.9	68.4	40.2
MGA_1295	LOCUS_12860	sequence3:1268284..1269363(+)	partial			WP_013098046.1	DUF2184 domain-containing protein	72.4	75.9	28.0
MGA_1328	LOCUS_13190	sequence3:1289256..1289567(-)	partial			WP_003812810.1	hypothetical protein	83.5	73.5	59.3
MGA_1356	LOCUS_13460	sequence3:1319583..1319789(-)	partial			WP_003809153.1	Hsp20/alpha crystallin family protein	100.0	50.4	69.1
MGA_1427	LOCUS_14170	sequence3:1395736..1396590(-)	partial			WP_000105143.1	exodeoxyribonuclease VIII	94.0	30.5	36.0
MGA_1461	LOCUS_14510	sequence3:1421655..1423274(+)	partial			WP_050298190.1	hypothetical protein	41.2	34.8	40.0
MGA_1477	LOCUS_14660	sequence3:1444037..1444366(-)	frameshift		1444485	WP_011204799.1	ATP-binding protein	100.0	17.3	49.6
MGA_1478	LOCUS_14670	sequence3:1444336..1445805(-)	frameshift		1444386	WP_011969804.1	sensor histidine kinase	96.3	75.3	41.7
MGA_1480	LOCUS_14690	sequence3:1447703..1448257(+)	partial			WP_015706139.1	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	85.9	44.9	47.5
MGA_1482	LOCUS_14710	sequence3:1449075..1449572(+)	partial			WP_003809129.1	DNA-3-methyladenine glycosylase	96.4	73.5	69.6
MGA_1537	LOCUS_15260	sequence3:1505999..1516027(+)	partial			WP_010930610.1	filamentous hemagglutinin/adhesin	27.1	25.6	35.8
MGA_1550	LOCUS_15390	sequence3:1531814..1532296(-)	internal_stop_codon	1532327..1532329(-)		WP_003813035.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	99.4	42.7	72.3
MGA_1551	LOCUS_15400	sequence3:1532327..1532932(-)	internal_stop_codon	1532327..1532329(-)		WP_010931189.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	100.0	54.0	73.1
MGA_1576	LOCUS_15650	sequence3:1560850..1561563(+)	partial			WP_010931524.1	energy transducer TonB	56.5	51.1	62.5
MGA_1587	LOCUS_15760	sequence3:1572370..1572699(-)	frameshift		1572715	WP_015064103.1	2-hydroxyacid dehydrogenase	100.0	34.4	74.3
MGA_1625	LOCUS_16140	sequence3:1617196..1618479(+)	frameshift		1618287	WP_010926358.1	YifB family Mg chelatase-like AAA ATPase	85.9	73.0	64.2
MGA_1626	LOCUS_16150	sequence3:1618365..1618715(+)	frameshift		1618287	WP_015039592.1	YifB family Mg chelatase-like AAA ATPase	91.4	21.2	54.7
MGA_1635	LOCUS_16240	sequence3:1627498..1628292(+)	partial			WP_014207873.1	DNA/RNA non-specific endonuclease	72.3	51.0	42.4
MGA_1675	LOCUS_16640	sequence3:1666525..1667544(-)	partial			WP_010918274.1	glycosyltransferase family 9 protein	46.0	40.3	30.9
MGA_1698	LOCUS_16870	sequence3:1690174..1690599(+)	internal_stop_codon	1690597..1690599(+)		WP_015063887.1	hypothetical protein	79.4	56.3	43.4
MGA_1728	LOCUS_17170	sequence3:1718441..1726147(+)	partial			WP_126621964.1	hemagglutinin repeat-containing protein	39.4	26.9	35.3
MGA_1742	LOCUS_17310	sequence3:1740221..1740679(-)	partial			WP_003811137.1	C40 family peptidase	93.4	71.4	75.5
MGA_1746	LOCUS_17350	sequence3:1744786..1746627(+)	partial			WP_012256552.1	sensor histidine kinase	32.5	43.1	30.3
MGA_1750	LOCUS_17390	sequence3:1750187..1757539(+)	partial			WP_027999870.1	tandem-95 repeat protein	8.9	4.8	29.4
MGA_1751	LOCUS_17400	sequence3:1757493..1782605(+)	partial			WP_011086495.1	VCBS domain-containing protein	16.6	34.6	23.0
MGA_1752	LOCUS_17410	sequence3:1782598..1784421(+)	partial			WP_011117762.1	HlyD family efflux transporter periplasmic adaptor subunit	56.5	70.9	27.3
MGA_1754	LOCUS_17430	sequence3:1786586..1788568(+)	partial			WP_010938126.1	preprotein translocase subunit SecA	83.8	64.2	41.2
MGA_1755	LOCUS_17440	sequence3:1788574..1789359(+)	partial			WP_011262581.1	efflux RND transporter periplasmic adaptor subunit	78.9	55.1	30.6
MGA_1757	LOCUS_17460	sequence3:1790826..1791497(-)	partial			WP_014206797.1	hydroxymethylglutaryl-CoA lyase	97.3	69.6	65.4
MGA_1780	LOCUS_17690	sequence3:1818481..1818753(+)	internal_stop_codon	1818751..1818753(+)		WP_013529858.1	cupin domain-containing protein	93.3	21.9	51.8
MGA_1781	LOCUS_17700	sequence3:1818760..1819602(+)	internal_stop_codon	1818751..1818753(+)		WP_013529858.1	cupin domain-containing protein	100.0	74.4	55.8
MGA_1847	LOCUS_18360	sequence3:1888015..1888677(+)	frameshift		1888058	WP_015705508.1	ABC transporter permease	93.6	71.0	49.0
MGA_1866	LOCUS_18550	sequence3:1906577..1907008(+)	partial			WP_003811667.1	NirD/YgiW/YdeI family stress tolerance protein	68.5	80.3	59.2
MGA_1877	LOCUS_18660	sequence3:1919341..1919847(+)	frameshift		1919757	WP_011086627.1	amidohydrolase family protein	76.2	32.7	39.7
MGA_1878	LOCUS_18670	sequence3:1919763..1920176(+)	frameshift,internal_stop_codon	1920175..1920177(+)	1919757,1920429	WP_011086627.1	amidohydrolase family protein	100.0	34.2	54.0
MGA_1879	LOCUS_18680	sequence3:1920261..1920578(+)	frameshift,internal_stop_codon	1920174..1920176(+)	1920428	WP_011086627.1	amidohydrolase family protein	45.7	12.0	54.2
MGA_1888	LOCUS_18770	sequence3:1929826..1930068(+)	partial			WP_003811358.1	hypothetical protein	86.2	73.7	54.8
MGA_1892	LOCUS_18810	sequence3:1933471..1934394(-)	partial			WP_009940958.1	c-type cytochrome	78.8	34.6	55.8
MGA_1898	LOCUS_18870	sequence3:1940751..1941941(-)	internal_stop_codon	1940751..1940753(-)		WP_004185818.1	multidrug transporter subunit MdtD	99.7	82.7	51.8
MGA_1900	LOCUS_18890	sequence3:1942960..1943583(-)	frameshift		1943579	WP_011039158.1	glutamine amidotransferase	88.4	72.0	47.5
MGA_1917	LOCUS_19060	sequence3:1959128..1962556(+)	partial			WP_011205345.1	ATP-binding protein	63.8	72.3	30.5
MGA_1926	LOCUS_19150	sequence3:1970974..1971468(+)	frameshift		1971432	WP_013225857.1	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	94.5	38.6	30.9
MGA_1927	LOCUS_19160	sequence3:1971428..1972186(+)	frameshift		1971432	WP_011227920.1	beta-ketoacyl-ACP synthase II	98.4	61.0	46.2
MGA_1988	LOCUS_19770	sequence3:2033032..2033700(+)	partial			WP_003811850.1	flagellar basal body-associated protein FliL	48.2	56.3	74.8
MGA_2000	LOCUS_19890	sequence3:2045352..2046566(-)	partial			WP_010926562.1	flagellar hook-associated protein FlgL	75.7	61.2	58.0
MGA_2021	LOCUS_20100	sequence3:2066271..2067956(-)	frameshift,internal_stop_codon	2066259..2066261(-),2066250..2066252(-)	2066309	WP_015039842.1	methyl-accepting chemotaxis protein	98.4	74.2	72.5
MGA_2031	LOCUS_20200	sequence3:2076433..2078028(-)	partial			WP_010886371.1	lysine methyltransferase	55.2	52.6	38.6
MGA_2043	LOCUS_20320	sequence3:2093891..2094478(-)	frameshift		2094500	WP_003811958.1	efflux RND transporter permease subunit	99.5	18.6	73.6
MGA_2044	LOCUS_20330	sequence3:2094384..2097059(-)	frameshift		2094509	WP_003811958.1	efflux RND transporter permease subunit	97.5	82.1	80.8
MGA_2054	LOCUS_20430	sequence3:2106100..2107353(-)	internal_stop_codon	2107417..2107419(-)		WP_015039828.1	ABC transporter substrate-binding protein	99.8	82.4	79.8
MGA_2055	LOCUS_20440	sequence3:2107417..2107623(-)	internal_stop_codon	2107417..2107419(-)		WP_010931079.1	ABC transporter substrate-binding protein	58.8	7.9	90.0
MGA_2060	LOCUS_20490	sequence3:2114431..2116059(+)	frameshift,internal_stop_codon	2116058..2116060(+)	2114254	WP_003807690.1	serine protease autotransporter SphB1	96.9	54.9	44.7
MGA_2061	LOCUS_20500	sequence3:2116072..2117046(+)	internal_stop_codon	2116057..2116059(+)		WP_003807690.1	serine protease autotransporter SphB1	99.4	35.1	38.8
MGA_2081	LOCUS_20690	sequence3:2137613..2137942(+)	partial			WP_003812179.1	I78 family peptidase inhibitor	62.4	59.6	55.9
MGA_2099	LOCUS_20870	sequence3:2160645..2161592(+)	partial			WP_014331794.1	MerR family transcriptional regulator	20.3	23.3	49.2
MGA_2108	LOCUS_20960	sequence3:2167906..2168832(-)	partial			WP_164920712.1	FAD-binding domain-containing protein	69.5	79.3	39.6
MGA_2110	LOCUS_20980	sequence3:2170546..2170920(-)	partial			WP_012640610.1	DUF393 domain-containing protein	66.1	63.4	37.8
MGA_2126	LOCUS_21140	sequence3:2189404..2190249(-)	internal_stop_codon	2190250..2190252(-)		WP_010931200.1	chromate efflux transporter	97.2	67.7	56.7
MGA_2127	LOCUS_21150	sequence3:2190250..2190624(-)	internal_stop_codon	2190250..2190252(-)		WP_010931200.1	chromate efflux transporter	89.5	27.1	62.2
MGA_2130	LOCUS_21180	sequence3:2193593..2195170(+)	partial			WP_011787412.1	autotransporter domain-containing protein	93.3	66.9	32.9
MGA_2131	LOCUS_21190	sequence3:2195268..2195531(-)	partial			WP_015039727.1	site-specific integrase	96.6	21.0	85.7
MGA_2132	LOCUS_21200	sequence3:2195464..2195949(-)	internal_stop_codon	2195959..2195961(-)		WP_015039727.1	site-specific integrase	86.3	34.8	79.9
MGA_2133	LOCUS_21210	sequence3:2196017..2196208(-)	internal_stop_codon	2195959..2195961(-)		WP_015039727.1	site-specific integrase	74.6	11.8	70.2
MGA_2151	LOCUS_21390	sequence3:2214409..2220450(-)	partial			WP_015063650.1	hemagglutinin repeat-containing protein	48.6	30.2	35.1
MGA_2152	LOCUS_21400	sequence3:2221191..2221361(+)	internal_stop_codon	2221446..2221448(+)		WP_003809166.1	tripartite tricarboxylate transporter substrate-binding protein	87.5	15.9	58.8
MGA_2181	LOCUS_21690	sequence3:2258136..2259035(+)	frameshift		2258011	WP_010926448.1	peptide chain release factor 2	100.0	81.5	89.0
MGA_2211	LOCUS_21990	sequence3:2287383..2287643(+)	partial			WP_010930549.1	DUF4148 domain-containing protein	68.6	55.0	57.4
MGA_2213	LOCUS_22010	sequence3:2290055..2290288(-)	partial			WP_011070539.1	DUF333 domain-containing protein	57.1	45.8	61.4
MGA_2270	LOCUS_22580	sequence3:2345914..2347500(-)	partial			WP_015064018.1	PA0069 family radical SAM protein	62.3	77.6	70.2
MGA_2279	LOCUS_22670	sequence3:2357486..2357875(-)	partial			WP_010930106.1	helix-hairpin-helix domain-containing protein	55.0	43.8	60.6
MGA_2313	LOCUS_23010	sequence3:2394485..2394820(+)	frameshift		2394805	WP_000400611.1	acyltransferase family protein	82.9	14.4	64.1
MGA_2314	LOCUS_23020	sequence3:2394924..2396540(+)	frameshift		2394808	WP_000400611.1	acyltransferase family protein	96.5	78.1	31.6
MGA_2353	LOCUS_23410	sequence3:2436822..2437607(+)	partial			WP_015063650.1	hemagglutinin repeat-containing protein	79.7	6.0	44.2
MGA_2372	LOCUS_23600	sequence3:2466490..2466675(-)	frameshift		2466730	WP_010926470.1	helix-turn-helix domain-containing protein	95.1	39.2	53.4
MGA_2374	LOCUS_23620	sequence3:2466807..2467031(+)	partial			WP_014206250.1	MFS transporter	64.9	11.5	72.9
MGA_2462	LOCUS_24500	sequence3:2561400..2564447(+)	frameshift,internal_stop_codon	2564447..2564449(+),2564459..2564461(+)	2563505,2563634,2563956,2564034	WP_010929828.1	Rne/Rng family ribonuclease	78.1	77.4	77.4
MGA_2528	LOCUS_25160	sequence3:2634556..2635254(-)	partial			WP_003813945.1	porin	100.0	57.2	74.4
MGA_2529	LOCUS_25170	sequence3:2635508..2635711(-)	frameshift		2635555	WP_010930034.1	porin	77.6	16.4	63.5
MGA_2559	LOCUS_25470	sequence3:2664995..2665285(+)	partial			WP_172665992.1	YtcA family lipoprotein	77.1	66.7	48.6
MGA_2630	LOCUS_26180	sequence3:2739110..2748547(+)	partial			WP_010930610.1	filamentous hemagglutinin/adhesin	28.8	25.6	35.8
MGA_2631	LOCUS_26190	sequence3:2748583..2748993(+)	frameshift		2748544,2748514,2748511	WP_015064126.1	C80 family cysteine peptidase	43.4	1.4	44.1
MGA_2641	LOCUS_26290	sequence3:2760704..2761579(-)	frameshift		2761604	WP_003809610.1	solute carrier family 23 protein	99.7	66.4	83.4
MGA_2642	LOCUS_26300	sequence3:2761485..2762069(-)	frameshift		2761613	WP_015064279.1	solute carrier family 23 protein	72.7	32.3	82.3
MGA_2655	LOCUS_26430	sequence3:2775896..2777836(-)	partial			WP_010930422.1	DNA polymerase III subunit gamma/tau	57.1	53.0	91.9
MGA_2705	LOCUS_26930	sequence3:2833000..2834400(-)	frameshift		2833011	WP_014328757.1	SulP family inorganic anion transporter	94.8	78.4	39.8
MGA_2715	LOCUS_27030	sequence3:2845981..2848224(+)	frameshift		2848200,2848197	WP_015064745.1	inverse autotransporter beta-barrel domain-containing protein	96.8	39.0	40.7
MGA_2744	LOCUS_27320	sequence3:2877866..2880598(-)	frameshift		2880579	WP_015040331.1	DUF748 domain-containing protein	99.0	78.0	63.6
MGA_2745	LOCUS_27330	sequence3:2880484..2881326(-)	frameshift		2880579	WP_015064340.1	DUF748 domain-containing protein	90.4	21.8	58.7
MGA_2768	LOCUS_27560	sequence3:2904216..2905235(+)	frameshift		2904497,2904666,2904533,2904633	WP_001129948.1	virulence-associated effector SrfA	97.3	77.0	29.5
MGA_2781	LOCUS_27690	sequence3:2921304..2922689(-)	partial			WP_011104008.1	PAS domain S-box protein	91.3	61.3	43.7
MGA_2782	LOCUS_27700	sequence3:2923069..2923734(+)	frameshift		2923707	WP_011036727.1	class I SAM-dependent methyltransferase	76.5	54.9	42.9
MGA_2783	LOCUS_27710	sequence3:2923731..2924030(+)	frameshift		2923707	WP_023998300.1	class I SAM-dependent methyltransferase	100.0	32.8	59.6
MGA_2811	LOCUS_27990	sequence3:2950958..2952256(-)	partial			WP_010941614.1	EAL domain-containing protein	57.4	29.5	34.5
MGA_2817	LOCUS_28050	sequence3:2958206..2959786(-)	partial			WP_033452234.1	methyl-accepting chemotaxis protein	71.3	65.3	55.2
MGA_2829	LOCUS_28170	sequence3:2972162..2973121(-)	partial			WP_003814901.1	ABC transporter substrate-binding protein	79.0	74.5	27.6
MGA_2855	LOCUS_28430	sequence3:2999527..3000042(-)	partial			WP_003413654.1	DedA family protein	87.7	69.3	37.0
MGA_2857	LOCUS_28450	sequence3:3000876..3001112(-)	partial			WP_015064994.1	CaiB/BaiF CoA-transferase family protein	98.7	18.8	59.7
MGA_2859	LOCUS_28470	sequence3:3002243..3014596(+)	partial			WP_010930610.1	filamentous hemagglutinin/adhesin	23.2	26.9	32.8
MGA_2927	LOCUS_29150	sequence3:3081845..3082855(+)	partial			WP_015040288.1	ABC transporter substrate-binding protein	50.9	50.9	33.3
MGA_2938	LOCUS_29260	sequence3:3095081..3095419(+)	partial			WP_011038682.1	DUF3325 domain-containing protein	81.2	60.5	40.9
MGA_2940	LOCUS_29280	sequence3:3096563..3097276(-)	partial			WP_013528057.1	DUF305 domain-containing protein	32.1	59.2	61.0
MGA_2965	LOCUS_29530	sequence3:3122293..3123672(-)	frameshift		3122319	WP_015243160.1	MmgE/PrpD family protein	83.9	80.6	30.9
MGA_2988	LOCUS_29760	sequence3:3146534..3147019(-)	frameshift,internal_stop_codon	3146307..3146309(-)	3146319	WP_009936644.1	IS3 family transposase	97.5	57.1	80.3
MGA_2989	LOCUS_29770	sequence3:3146968..3147288(-)	frameshift		3146738	WP_145162746.1	IS3-like element ISSme1 family transposase	83.0	22.6	76.1
MGA_2990	LOCUS_29780	sequence3:3147257..3147532(+)	frameshift		3147757,3147526	WP_164925630.1	IS3-like element ISSod2 family transposase	64.8	16.5	71.2
MGA_2991	LOCUS_29790	sequence3:3147726..3148352(+)	frameshift		3147757,3147526	WP_164925630.1	IS3-like element ISSod2 family transposase	91.3	53.1	65.8
MGA_2993	LOCUS_29810	sequence3:3149281..3151221(+)	partial			WP_003416064.1	serine/threonine protein kinase PknK	31.6	19.0	32.1
MGA_2994	LOCUS_29820	sequence3:3151454..3151807(-)	partial			WP_024698054.1	IS66 family transposase	82.9	19.1	79.4
MGA_2995	LOCUS_29830	sequence3:3151769..3152110(+)	partial			WP_024698054.1	IS66 family transposase	99.1	22.0	56.2
MGA_3011	LOCUS_29990	sequence3:3165921..3167228(-)	partial			WP_033446951.1	signal recognition particle-docking protein FtsY	71.5	77.4	90.0
MGA_3029	LOCUS_30170	sequence3:3185833..3187221(+)	partial			WP_164926902.1	restriction endonuclease subunit S	67.1	70.3	51.0
MGA_3033	LOCUS_30210	sequence3:3192354..3192674(-)	frameshift,internal_stop_codon	3192731..3192733(-),3192692..3192694(-)	3192376,3192802,3192445	WP_005615166.1	tyrosine-type recombinase/integrase	71.7	19.2	69.7
MGA_3065	LOCUS_30530	sequence3:3229186..3229314(-)	partial			WP_010931326.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	90.5	9.0	92.1
MGA_3106	LOCUS_30940	sequence3:3281198..3281710(-)	partial			WP_015039012.1	META and DUF4377 domain-containing protein	94.7	60.5	59.8
MGA_3108	LOCUS_30960	sequence3:3282466..3283158(+)	frameshift		3283119	WP_000157542.1	phosphoethanolamine--lipid A transferase EptA	90.0	39.2	23.9
MGA_3109	LOCUS_30970	sequence3:3283155..3284027(+)	frameshift		3283119	WP_000157542.1	phosphoethanolamine--lipid A transferase EptA	99.3	56.2	41.4
MGA_3110	LOCUS_30980	sequence3:3284024..3284620(+)	partial			WP_011578472.1	lipid A 1-phosphatase LpxE	74.7	75.8	40.3
MGA_3111	LOCUS_30990	sequence3:3284965..3286464(+)	partial			WP_035257407.1	autotransporter domain-containing protein	88.2	34.6	26.8
MGA_3112	LOCUS_31000	sequence3:3286442..3288880(+)	partial			WP_015063802.1	autotransporter SphB2	92.1	72.1	32.8
MGA_3137	LOCUS_31250	sequence3:3315967..3316863(+)	partial			WP_167435501.1	type II toxin-antitoxin system HipA family toxin	99.3	70.9	26.2
MGA_3144	LOCUS_31320	sequence3:3321644..3323122(-)	partial			WP_097383638.1	Ti-type conjugative transfer relaxase TraA	46.3	23.9	46.1
MGA_3149	LOCUS_31370	sequence3:3327974..3328204(+)	partial			WP_015040259.1	porin	61.8	12.4	50.0
MGA_3151	LOCUS_31390	sequence3:3331611..3332591(+)	partial			WP_011229194.1	HTH-type transcriptional repressor CarH	74.5	76.5	33.3
MGA_3153	LOCUS_31410	sequence3:3333361..3333876(+)	frameshift		3333816,3333795	WP_003114922.1	PAS domain-containing methyl-accepting chemotaxis protein	88.3	35.0	45.0
MGA_3154	LOCUS_31420	sequence3:3333885..3334577(+)	frameshift		3333816,3333795	WP_002210238.1	PAS domain-containing methyl-accepting chemotaxis protein	89.1	47.5	34.4
MGA_3157	LOCUS_31450	sequence3:3336732..3338105(-)	partial			WP_011404984.1	amino acid permease	74.2	44.1	27.4
MGA_3167	LOCUS_31550	sequence3:3345316..3346125(+)	frameshift		3345825,3345852,3346093	WP_003112726.1	type II secretion system minor pseudopilin GspK	91.8	81.6	35.2
MGA_3168	LOCUS_31560	sequence3:3346250..3347224(+)	partial			WP_010895515.1	type II secretion system protein GspL	28.7	24.9	42.1
MGA_3230	LOCUS_32180	sequence3:3415636..3416388(-)	partial			WP_063171605.1	transporter substrate-binding domain-containing protein	81.2	72.8	39.9
MGA_3244	LOCUS_32320	sequence3:3430138..3431265(+)	frameshift		3431232	WP_004187216.1	FAD-dependent oxidoreductase	95.7	46.6	43.7
MGA_3245	LOCUS_32330	sequence3:3431253..3432467(+)	frameshift		3431232	WP_011205761.1	FAD-dependent oxidoreductase	95.3	50.9	49.4
MGA_3253	LOCUS_32410	sequence3:3439108..3439440(+)	frameshift		3439392	WP_003807452.1	helix-turn-helix transcriptional regulator	88.2	79.6	40.3
MGA_3297	LOCUS_32850	sequence3:3485306..3485545(+)	partial			WP_010201208.1	helix-turn-helix domain-containing protein	70.9	60.2	73.2
MGA_3315	LOCUS_33030	sequence3:3501996..3503531(-)	frameshift		3503620	WP_002222141.1	TonB-dependent hemoglobin receptor HmbR	98.8	67.9	26.8
MGA_3316	LOCUS_33040	sequence3:3503504..3504220(-)	partial			WP_003705045.1	haemoglobin-haptoglobin-utilization protein HupB	70.2	22.2	42.2
MGA_3350	LOCUS_33380	sequence3:3537484..3537708(-)	partial			WP_003818441.1	DUF1289 domain-containing protein	78.4	69.9	93.1
MGA_3388	LOCUS_33760	sequence3:3571806..3573548(-)	partial			WP_015063650.1	hemagglutinin repeat-containing protein	81.6	15.4	31.8
MGA_3396	LOCUS_33840	sequence3:3581259..3581567(-)	partial			WP_004550867.1	zinc ribbon domain-containing protein	63.7	57.5	78.5
MGA_3420	LOCUS_34080	sequence3:3611148..3612188(-)	partial			WP_011727378.1	acyltransferase	53.2	58.7	29.6
MGA_3421	LOCUS_34090	sequence3:3612191..3612958(-)	partial			WP_011021096.1	polysaccharide deacetylase family protein	96.1	42.2	38.6
MGA_3423	LOCUS_34110	sequence3:3614987..3615910(-)	partial			WP_011024324.1	glycosyltransferase	99.7	57.1	44.1
MGA_3443	LOCUS_34310	sequence3:3640077..3640475(-)	partial			WP_003806941.1	c-type cytochrome	100.0	56.7	55.3
MGA_3503	LOCUS_34910	sequence3:3693106..3693387(-)	partial			WP_003806884.1	preprotein translocase subunit SecE	100.0	73.8	83.9
