{ "type": "genome", "identifier": "GCF_900446205.1", "organism": "Burkholderia multivorans", "title": "Burkholderia multivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900446205.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4475694", "wgs_master": "UAQY00000000.1", "refseq_category": "na", "taxid": "87883", "species_taxid": "87883", "organism_name": "Burkholderia multivorans", "infraspecific_name": "strain=NCTC13007", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/30", "asm_name": "51485_A01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900446205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/446/205/GCF_900446205.1_51485_A01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6318983", "genome_size_ungapped": "6318983", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900446205.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "5769", "protein_coding_gene_count": "5565", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-30", "dateModified": "2018-06-30", "datePublished": "2018-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia multivorans" ], "sample_taxid": [ "87883" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "1.690 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6318983", "Number of Sequences": "12", "Longest Sequences (bp)": "1937714", "N50 (bp)": "722893", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "5689", "Average Protein Length": "322.3", "Coding Ratio (%)": "87.1", "Number of rRNAs": "14", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia multivorans", "strain": "strain=NCTC13007", "accession": "GCA_900446205.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2099, "total_fragments": 2099, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 99.9985, "matched_fragments": 2095, "total_fragments": 2099, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000286555.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 99.7573, "matched_fragments": 1743, "total_fragments": 2099, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 91.0377, "matched_fragments": 1699, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia dolosa", "strain": "strain=LMG 18943", "accession": "GCA_902499135.1", "taxid": 152500, "species_taxid": 152500, "relation_to_type": "type", "validated": true, "ani": 89.6685, "matched_fragments": 1501, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cenocepacia", "strain": "strain=NCTC13227", "accession": "GCA_900446215.1", "taxid": 95486, "species_taxid": 95486, "relation_to_type": "type", "validated": true, "ani": 89.3875, "matched_fragments": 1697, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=DSM 10685", "accession": "GCA_001028665.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 89.3797, "matched_fragments": 1611, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia metallica", "strain": "strain=LMG 24068", "accession": "GCA_902832845.1", "taxid": 488729, "species_taxid": 488729, "relation_to_type": "type", "validated": true, "ani": 89.2129, "matched_fragments": 1662, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 89.1891, "matched_fragments": 1610, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia metallica", "strain": "", "accession": "GCA_902499065.1", "taxid": 488729, "species_taxid": 488729, "relation_to_type": "type", "validated": true, "ani": 89.1366, "matched_fragments": 1614, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ambifaria", "strain": "strain=AMMD", "accession": "GCA_000203915.1", "taxid": 152480, "species_taxid": 152480, "relation_to_type": "type", "validated": true, "ani": 89.1297, "matched_fragments": 1679, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 88.2164, "matched_fragments": 1488, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 88.1356, "matched_fragments": 1539, "total_fragments": 2099, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", 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