{ "type": "genome", "identifier": "GCF_900446225.1", "organism": "Burkholderia gladioli", "title": "Burkholderia gladioli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900446225.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104224816", "wgs_master": "UARB00000000.1", "refseq_category": "na", "taxid": "28095", "species_taxid": "28095", "organism_name": "Burkholderia gladioli", "infraspecific_name": "strain=NCTC12378", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/30", "asm_name": "57845_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900446225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/446/225/GCF_900446225.1_57845_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8391235", "genome_size_ungapped": "8391235", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900446225.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "7383", "protein_coding_gene_count": "7187", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-30", "dateModified": "2018-06-30", "datePublished": "2018-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia gladioli" ], "sample_taxid": [ "28095" ], "sample_host_organism": [ "Plant (Gladiolus species)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.259 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8391235", "Number of Sequences": "42", "Longest Sequences (bp)": "866067", "N50 (bp)": "378971", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "7234", "Average Protein Length": "332.9", "Coding Ratio (%)": "86.1", "Number of rRNAs": "15", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia gladioli", "strain": "strain=NCTC12378", "accession": "GCA_900446225.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2774, "total_fragments": 2776, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=ATCC 10248", "accession": "GCA_000959725.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 99.997, "matched_fragments": 2768, "total_fragments": 2776, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=NBRC 13700", "accession": "GCA_000739755.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 99.9533, "matched_fragments": 2658, "total_fragments": 2776, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 87.4255, "matched_fragments": 1825, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=ATCC 43733", "accession": "GCA_001411805.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 87.3854, "matched_fragments": 1866, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 87.3685, "matched_fragments": 1839, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=LMG 2196", "accession": "GCA_902832765.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 87.0286, "matched_fragments": 1568, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=ATCC 33617", "accession": "GCA_000960995.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 86.9733, "matched_fragments": 1587, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 82.8526, "matched_fragments": 1319, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8395, "matched_fragments": 1354, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 82.8263, "matched_fragments": 1377, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 82.6507, "matched_fragments": 1324, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=LMG 28158", "accession": "GCA_902833055.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.5671, "matched_fragments": 1324, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 80.3834, "matched_fragments": 1034, "total_fragments": 2776, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000959725.1", "gtdb_species": "s__Burkholderia gladioli", "ani": 99.997, "matched_fragments": 2768, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 265, "status": "conclusive" }, { "accession": "GCA_009914575.1", "gtdb_species": "s__Burkholderia gladioli_B", "ani": 87.8132, "matched_fragments": 414, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001411805.1", "gtdb_species": "s__Burkholderia plantarii", "ani": 87.3517, "matched_fragments": 1870, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000960995.1", "gtdb_species": "s__Burkholderia glumae", "ani": 86.9485, "matched_fragments": 1590, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_017104645.1", "gtdb_species": "s__Burkholderia sp017104645", "ani": 86.8961, "matched_fragments": 1476, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009911875.1", "gtdb_species": "s__Burkholderia gladioli_A", "ani": 85.7203, "matched_fragments": 401, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000687455.2", "gtdb_species": "s__Burkholderia sp000687455", "ani": 82.9955, "matched_fragments": 1032, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902499075.1", "gtdb_species": "s__Burkholderia pseudomultivorans", "ani": 82.8671, "matched_fragments": 1349, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.54", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_013403875.1", "gtdb_species": "s__Burkholderia guangdongensis", "ani": 82.5829, "matched_fragments": 1054, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902833055.1", "gtdb_species": "s__Burkholderia territorii", "ani": 82.5229, "matched_fragments": 1331, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.1139, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 37, "status": "-" }, { "accession": "GCF_902499125.1", "gtdb_species": "s__Burkholderia arboris", "ani": 82.3374, "matched_fragments": 1405, "total_fragments": 2776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.097, "doubling_h": -0.157, "growth_tmp": 28.0, "optimum_tmp": 32.5, "optimum_ph": 6.64, "genome_size": 8723746.45, "gc_content": 65.382, "coding_genes": 7335.143, "rRNA16S_genes": 5.0, "tRNA_genes": 68.6, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.25, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Burkholderia", "gladioli" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }