{
    "type": "genome",
    "identifier": "GCF_900446675.1",
    "organism": "Capnocytophaga granulosa",
    "title": "Capnocytophaga granulosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900446675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA44542168",
        "wgs_master": "UFVE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "45242",
        "species_taxid": "45242",
        "organism_name": "Capnocytophaga granulosa",
        "infraspecific_name": "strain=NCTC12948",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/07",
        "asm_name": "51334_C01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900446675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/446/675/GCF_900446675.1_51334_C01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2843797",
        "genome_size_ungapped": "2843797",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900446675.1-RS_2024_11_21",
        "annotation_date": "2024-11-21",
        "total_gene_count": "2614",
        "protein_coding_gene_count": "2514",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-07",
    "dateModified": "2018-08-07",
    "datePublished": "2018-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga granulosa"
        ],
        "sample_taxid": [
            "45242"
        ],
        "sample_host_organism": [
            "Human (Male)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.801 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2843797",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2743468",
        "N50 (bp)": "2743468",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "2539",
        "Average Protein Length": "331.6",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "9",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Capnocytophaga granulosa",
                "strain": "strain=NCTC12948",
                "accession": "GCA_900446675.1",
                "taxid": 45242,
                "species_taxid": 45242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 942,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga granulosa",
                "strain": "strain=DSM 11449",
                "accession": "GCA_900106575.1",
                "taxid": 45242,
                "species_taxid": 45242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9784,
                "matched_fragments": 882,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga granulosa",
                "strain": "strain=ATCC 51502",
                "accession": "GCA_000411115.1",
                "taxid": 45242,
                "species_taxid": 45242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9557,
                "matched_fragments": 906,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga gingivalis",
                "strain": "strain=ATCC 33624",
                "accession": "GCA_000174755.1",
                "taxid": 1017,
                "species_taxid": 1017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8935,
                "matched_fragments": 503,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga haemolytica",
                "strain": "strain=CCUG 32990",
                "accession": "GCA_001553545.1",
                "taxid": 45243,
                "species_taxid": 45243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8839,
                "matched_fragments": 60,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=FDAARGOS_1468",
                "accession": "GCA_019930725.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8469,
                "matched_fragments": 109,
                "total_fragments": 946,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000411115.1",
                "gtdb_species": "s__Capnocytophaga granulosa",
                "ani": 99.9557,
                "matched_fragments": 906,
                "total_fragments": 946,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000466425.1",
                "gtdb_species": "s__Capnocytophaga sp000466425",
                "ani": 84.6323,
                "matched_fragments": 655,
                "total_fragments": 946,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000192225.1",
                "gtdb_species": "s__Capnocytophaga sp000192225",
                "ani": 81.9206,
                "matched_fragments": 346,
                "total_fragments": 946,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000174755.1",
                "gtdb_species": "s__Capnocytophaga gingivalis",
                "ani": 81.8728,
                "matched_fragments": 503,
                "total_fragments": 946,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905372595.1",
                "gtdb_species": "s__Capnocytophaga sp905372595",
                "ani": 79.5218,
                "matched_fragments": 166,
                "total_fragments": 946,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": 0.5,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.667,
        "optimum_ph": 6.5,
        "genome_size": 2734559.667,
        "gc_content": 41.5,
        "coding_genes": 2322.458,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 47.016,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.333,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Capnocytophaga",
        "granulosa"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}