{ "type": "genome", "identifier": "GCF_900447205.1", "organism": "Corynebacterium pilosum", "title": "Corynebacterium pilosum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900447205.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4530650", "wgs_master": "UFXQ00000000.1", "refseq_category": "reference genome", "taxid": "35756", "species_taxid": "35756", "organism_name": "Corynebacterium pilosum", "infraspecific_name": "strain=NCTC11862", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "52184_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900447205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/447/205/GCF_900447205.1_52184_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2593653", "genome_size_ungapped": "2593653", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900447205.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2433", "protein_coding_gene_count": "2333", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium pilosum" ], "sample_taxid": [ "35756" ], "sample_host_organism": [ "Cow" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.732 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2593653", "Number of Sequences": "2", "Longest Sequences (bp)": "2579384", "N50 (bp)": "2579384", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "2404", "Average Protein Length": "325.8", "Coding Ratio (%)": "90.6", "Number of rRNAs": "12", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium pilosum", "strain": "strain=NCTC11862", "accession": "GCA_900447205.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 862, "total_fragments": 863, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium pilosum", "strain": "strain=DSM 20521", "accession": "GCA_000373805.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 99.9538, "matched_fragments": 822, "total_fragments": 863, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium pilosum", "strain": "strain=CIP103422", "accession": "GCA_001044155.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 99.9409, "matched_fragments": 838, "total_fragments": 863, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium cystitidis", "strain": "strain=NCTC11863", "accession": "GCA_900187295.1", "taxid": 35757, "species_taxid": 35757, "relation_to_type": "type", "validated": true, "ani": 80.6617, "matched_fragments": 514, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium cystitidis", "strain": "strain=DSM 20524", "accession": "GCA_900111265.1", "taxid": 35757, "species_taxid": 35757, "relation_to_type": "type", "validated": true, "ani": 80.5479, "matched_fragments": 509, "total_fragments": 863, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000373805.1", "gtdb_species": "s__Corynebacterium pilosum", "ani": 99.9538, "matched_fragments": 822, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900187295.1", "gtdb_species": "s__Corynebacterium cystitidis", "ani": 80.696, 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863, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014490555.1", "gtdb_species": "s__Corynebacterium sp014490555", "ani": 78.4303, "matched_fragments": 242, "total_fragments": 863, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900105505.1", "gtdb_species": "s__Corynebacterium coyleae", "ani": 78.4022, "matched_fragments": 223, "total_fragments": 863, "gtdb_taxonomy": 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