{ "type": "genome", "identifier": "GCF_900447535.1", "organism": "Dermacoccus nishinomiyaensis", "title": "Dermacoccus nishinomiyaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900447535.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4364207", "wgs_master": "UFXX00000000.1", "refseq_category": "na", "taxid": "1274", "species_taxid": "1274", "organism_name": "Dermacoccus nishinomiyaensis", "infraspecific_name": "strain=NCTC11039", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50279_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900447535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/447/535/GCF_900447535.1_50279_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3098047", "genome_size_ungapped": "3098047", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900447535.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "2916", "protein_coding_gene_count": "2814", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Dermacoccus nishinomiyaensis" ], "sample_taxid": [ "1274" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.828 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3098047", "Number of Sequences": "2", "Longest Sequences (bp)": "2524735", "N50 (bp)": "2524735", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.1", "Number of CDSs": "2920", "Average Protein Length": "312.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "9", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dermacoccus nishinomiyaensis", "strain": "strain=NCTC11039", "accession": "GCA_900447535.1", "taxid": 1274, "species_taxid": 1274, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1026, "total_fragments": 1032, "ani_threshold": 95, 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"relation_to_type": "type", "validated": true, "ani": 77.6439, "matched_fragments": 245, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas oligotrophica", "strain": "strain=DSM 24482", "accession": "GCA_013409875.1", "taxid": 931536, "species_taxid": 931536, "relation_to_type": "type", "validated": true, "ani": 77.3127, "matched_fragments": 279, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas endophytica", "strain": "strain=SYSUP0004", "accession": "GCA_004123805.1", "taxid": 2494735, "species_taxid": 2494735, "relation_to_type": "type", "validated": true, "ani": 77.1879, "matched_fragments": 239, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": 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