{ "type": "genome", "identifier": "GCF_900447555.1", "organism": "Corynebacterium matruchotii", "title": "Corynebacterium matruchotii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900447555.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4504044", "wgs_master": "UARK00000000.1", "refseq_category": "na", "taxid": "43768", "species_taxid": "43768", "organism_name": "Corynebacterium matruchotii", "infraspecific_name": "strain=NCTC10254", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/28", "asm_name": "51470_A02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900447555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/447/555/GCF_900447555.1_51470_A02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2854659", "genome_size_ungapped": "2854659", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900447555.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "2597", "protein_coding_gene_count": "2470", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-28", "dateModified": "2018-06-28", "datePublished": "2018-06-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium matruchotii" ], "sample_taxid": [ "43768" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2854659", "Number of Sequences": "36", "Longest Sequences (bp)": "1041446", "N50 (bp)": "257579", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "2554", "Average Protein Length": "313.0", "Coding Ratio (%)": "84.0", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium matruchotii", "strain": "strain=NCTC10254", "accession": "GCA_900447555.1", "taxid": 43768, "species_taxid": 43768, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 928, "total_fragments": 930, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium matruchotii", "strain": "strain=ATCC 14266", "accession": "GCA_011612265.2", "taxid": 43768, "species_taxid": 43768, "relation_to_type": "type", "validated": true, "ani": 99.9961, "matched_fragments": 929, "total_fragments": 930, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium matruchotii", "strain": "strain=ATCC 14266", "accession": "GCA_000175375.1", "taxid": 43768, "species_taxid": 43768, "relation_to_type": "type", "validated": true, "ani": 99.9872, "matched_fragments": 925, "total_fragments": 930, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium rouxii", "strain": "strain=FRC0190", "accession": "GCA_902702935.1", "taxid": 2719119, "species_taxid": 2719119, "relation_to_type": "type", "validated": true, "ani": 78.8391, "matched_fragments": 64, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pseudopelargi", "strain": "strain=812CH", "accession": "GCA_003814005.1", "taxid": 2080757, "species_taxid": 2080757, "relation_to_type": "type", "validated": true, "ani": 78.3397, "matched_fragments": 91, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 78.2188, "matched_fragments": 87, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.1631, "matched_fragments": 135, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aquilae", "strain": "strain=S-613", "accession": "GCA_001941445.1", "taxid": 203263, "species_taxid": 203263, "relation_to_type": "type", "validated": true, "ani": 77.9912, "matched_fragments": 127, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=DSM 44123", "accession": "GCA_001913265.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 77.6283, "matched_fragments": 65, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 77.3047, "matched_fragments": 115, "total_fragments": 930, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011612265.2", 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"s__Corynebacterium diphtheriae", "ani": 78.5196, "matched_fragments": 73, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 346, "status": "-" }, { "accession": "GCF_004114895.1", "gtdb_species": "s__Corynebacterium pelargi", "ani": 78.2802, "matched_fragments": 91, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009734425.1", "gtdb_species": "s__Corynebacterium sp009734425", "ani": 78.1724, "matched_fragments": 87, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814005.1", "gtdb_species": "s__Corynebacterium pseudopelargi", "ani": 78.1428, "matched_fragments": 88, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000550805.1", "gtdb_species": "s__Corynebacterium vitaeruminis", "ani": 78.1089, "matched_fragments": 137, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001941445.1", "gtdb_species": "s__Corynebacterium aquilae", "ani": 77.9673, "matched_fragments": 127, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000767055.1", "gtdb_species": "s__Corynebacterium doosanense", "ani": 77.7431, "matched_fragments": 89, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001941485.1", "gtdb_species": "s__Corynebacterium frankenforstense", "ani": 77.7003, "matched_fragments": 94, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001412105.1", "gtdb_species": "s__Corynebacterium oculi", "ani": 77.4183, 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94, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900176155.1", "gtdb_species": "s__Corynebacterium glucuronolyticum", "ani": 76.7448, "matched_fragments": 50, "total_fragments": 930, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.275, "cell_length": 0.068, "doubling_h": -0.089, "growth_tmp": 36.0, "optimum_tmp": 37.0, "optimum_ph": 7.292, "genome_size": 2911566.5, "gc_content": 57.05, "coding_genes": 2390.094, "rRNA16S_genes": 4.282, "tRNA_genes": 52.979, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "matruchotii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }