{ "type": "genome", "identifier": "GCF_900447735.1", "organism": "Enterococcus faecium", "title": "Enterococcus faecium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900447735.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3856679", "wgs_master": "UFYJ00000000.1", "refseq_category": "na", "taxid": "1352", "species_taxid": "1352", "organism_name": "Enterococcus faecium", "infraspecific_name": "strain=NCTC7171", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "43941_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900447735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/447/735/GCF_900447735.1_43941_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2667210", "genome_size_ungapped": "2667210", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-19", "total_gene_count": "2612", "protein_coding_gene_count": "2443", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus faecium" ], "sample_taxid": [ "1352" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2667210", "Number of Sequences": "7", "Longest Sequences (bp)": "2529580", "N50 (bp)": "2529580", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "2536", "Average Protein Length": "296.1", "Coding Ratio (%)": "84.5", "Number of rRNAs": "18", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus faecium", "strain": "strain=NCTC7171", "accession": "GCA_900447735.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 885, "total_fragments": 885, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NBRC 100486", "accession": "GCA_001544255.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 99.9796, "matched_fragments": 808, "total_fragments": 885, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus lactis", "strain": "strain=LMG 25958", "accession": "GCA_015904215.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 94.6613, "matched_fragments": 750, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 94.5677, "matched_fragments": 760, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 81.4103, "matched_fragments": 419, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 80.6325, "matched_fragments": 386, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 80.2834, "matched_fragments": 384, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 80.2079, "matched_fragments": 358, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 79.8657, "matched_fragments": 349, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 78.0115, "matched_fragments": 99, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001544255.1", "gtdb_species": "s__Enterococcus_B 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