{
    "type": "genome",
    "identifier": "GCF_900447955.1",
    "organism": "Enterococcus malodoratus",
    "title": "Enterococcus malodoratus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900447955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3714879",
        "wgs_master": "UFXU00000000.1",
        "refseq_category": "na",
        "taxid": "71451",
        "species_taxid": "71451",
        "organism_name": "Enterococcus malodoratus",
        "infraspecific_name": "strain=NCTC12365",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/01",
        "asm_name": "43366_G01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900447955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/447/955/GCF_900447955.1_43366_G01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4628646",
        "genome_size_ungapped": "4628646",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900447955.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "4554",
        "protein_coding_gene_count": "4429",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-01",
    "dateModified": "2018-08-01",
    "datePublished": "2018-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Enterococcus malodoratus"
        ],
        "sample_taxid": [
            "71451"
        ],
        "sample_host_organism": [
            "environmental"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.307 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4628646",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2073467",
        "N50 (bp)": "1326400",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "4515",
        "Average Protein Length": "298.3",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "18",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Enterococcus malodoratus",
                "strain": "strain=NCTC12365",
                "accession": "GCA_900447955.1",
                "taxid": 71451,
                "species_taxid": 71451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1540,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus malodoratus",
                "strain": "strain=ATCC 43197",
                "accession": "GCA_000407185.1",
                "taxid": 71451,
                "species_taxid": 71451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9995,
                "matched_fragments": 1534,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus malodoratus",
                "strain": "strain=ATCC 43197",
                "accession": "GCA_000393875.1",
                "taxid": 71451,
                "species_taxid": 71451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9811,
                "matched_fragments": 1525,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus malodoratus",
                "strain": "strain=DSM 20681",
                "accession": "GCA_001886025.1",
                "taxid": 71451,
                "species_taxid": 71451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9441,
                "matched_fragments": 1447,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus hulanensis",
                "strain": "strain=190-7",
                "accession": "GCA_005405485.1",
                "taxid": 2559929,
                "species_taxid": 2559929,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0428,
                "matched_fragments": 932,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus avium",
                "strain": "strain=DSM 20679",
                "accession": "GCA_001885775.1",
                "taxid": 33945,
                "species_taxid": 33945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9363,
                "matched_fragments": 793,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus raffinosus",
                "strain": "strain=NBRC 100492",
                "accession": "GCA_001544115.1",
                "taxid": 71452,
                "species_taxid": 71452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6276,
                "matched_fragments": 793,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vagococcus xieshaowenii",
                "strain": "strain=personal::cf-49",
                "accession": "GCA_004792515.1",
                "taxid": 2562451,
                "species_taxid": 2562451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9759,
                "matched_fragments": 62,
                "total_fragments": 1542,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000407185.1",
                "gtdb_species": "s__Enterococcus_A malodoratus",
                "ani": 99.9995,
                "matched_fragments": 1534,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000406965.1",
                "gtdb_species": "s__Enterococcus_A avium",
                "ani": 82.2029,
                "matched_fragments": 828,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 43,
                "status": "-"
            },
            {
                "accession": "GCF_005405485.1",
                "gtdb_species": "s__Enterococcus_A hulanensis",
                "ani": 82.0507,
                "matched_fragments": 931,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "97.02",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_017315985.1",
                "gtdb_species": "s__Enterococcus_A sp017315985",
                "ani": 81.8467,
                "matched_fragments": 838,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018917525.1",
                "gtdb_species": "s__Enterococcus_A raffinosus_A",
                "ani": 81.6903,
                "matched_fragments": 834,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001886185.1",
                "gtdb_species": "s__Enterococcus_A raffinosus",
                "ani": 81.6769,
                "matched_fragments": 779,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000407545.1",
                "gtdb_species": "s__Enterococcus_A gilvus",
                "ani": 81.6433,
                "matched_fragments": 705,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001544295.1",
                "gtdb_species": "s__Enterococcus_A pseudoavium",
                "ani": 81.506,
                "matched_fragments": 535,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001885905.1",
                "gtdb_species": "s__Enterococcus_A devriesei",
                "ani": 80.9104,
                "matched_fragments": 569,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_005405225.1",
                "gtdb_species": "s__Enterococcus_A dongliensis",
                "ani": 80.8798,
                "matched_fragments": 393,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001885945.1",
                "gtdb_species": "s__Enterococcus_A hermanniensis",
                "ani": 80.2404,
                "matched_fragments": 438,
                "total_fragments": 1542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.04,
        "cell_length": -0.019,
        "doubling_h": -0.346,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 9.6,
        "genome_size": 4626548.0,
        "gc_content": 38.565,
        "coding_genes": 2937.768,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 60.871,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.031,
        "coccus_cell_shape": 0.812,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.156,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Enterococcus",
        "malodoratus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}