{ "type": "genome", "identifier": "GCF_900450735.1", "organism": "Gallibacterium anatis", "title": "Gallibacterium anatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900450735.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4362422", "wgs_master": "UGGZ00000000.1", "refseq_category": "na", "taxid": "750", "species_taxid": "750", "organism_name": "Gallibacterium anatis", "infraspecific_name": "strain=NCTC11413", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "49950_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900450735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/450/735/GCF_900450735.1_49950_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2605171", "genome_size_ungapped": "2605171", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "2546", "protein_coding_gene_count": "2408", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Gallibacterium anatis" ], "sample_taxid": [ "750" ], "sample_host_organism": [ "Bird (Duck)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2605171", "Number of Sequences": "3", "Longest Sequences (bp)": "2576053", "N50 (bp)": "2576053", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "2467", "Average Protein Length": "314.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "19", "Number of tRNAs": "60", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gallibacterium anatis", "strain": "strain=NCTC11413", "accession": "GCA_900450735.1", "taxid": 750, "species_taxid": 750, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 865, "total_fragments": 867, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gallibacterium anatis", "strain": "strain=DSM 16844", "accession": "GCA_000379785.1", "taxid": 750, "species_taxid": 750, "relation_to_type": "type", "validated": true, "ani": 99.8395, "matched_fragments": 758, "total_fragments": 867, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gallibacterium anatis", "strain": "strain=F149", "accession": "GCA_000772265.1", "taxid": 750, "species_taxid": 750, "relation_to_type": "type", "validated": true, "ani": 99.8378, "matched_fragments": 740, "total_fragments": 867, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gallibacterium salpingitidis", "strain": "strain=F150", "accession": "GCA_001678495.1", "taxid": 505341, "species_taxid": 505341, "relation_to_type": "type", "validated": true, "ani": 79.982, "matched_fragments": 370, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia manganoxydans", "strain": "strain=LLDRA6", "accession": "GCA_016618195.1", "taxid": 2923283, "species_taxid": 2923283, "relation_to_type": "type", "validated": true, "ani": 78.8946, "matched_fragments": 54, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter kilianii", "strain": "strain=PN_528", "accession": "GCA_003130255.1", "taxid": 2025884, "species_taxid": 2025884, "relation_to_type": "type", "validated": true, "ani": 78.7781, "matched_fragments": 118, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella canis", "strain": "strain=NCTC11621", "accession": "GCA_900454865.1", "taxid": 753, "species_taxid": 753, "relation_to_type": "type", "validated": true, "ani": 78.6351, "matched_fragments": 105, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus seminis", "strain": "strain=NCTC10851", "accession": "GCA_900460625.1", "taxid": 722, "species_taxid": 722, "relation_to_type": "type", "validated": true, "ani": 78.4164, "matched_fragments": 149, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter haemolyticus", "strain": "strain=DSM 111151", "accession": "GCA_015356115.1", "taxid": 2778911, "species_taxid": 2778911, "relation_to_type": "type", "validated": true, "ani": 78.3479, "matched_fragments": 122, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus aegyptius", "strain": "strain=NCTC8502", "accession": "GCA_900475885.1", "taxid": 197575, "species_taxid": 197575, "relation_to_type": "type", "validated": true, "ani": 78.2318, "matched_fragments": 114, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia haemolytica", "strain": "strain=DSM 10531", "accession": "GCA_004342115.1", "taxid": 75985, "species_taxid": 75985, "relation_to_type": "type", 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"total_fragments": 867, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Gallibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 28, "status": "conclusive" }, { "accession": "GCF_000771875.1", "gtdb_species": "s__Gallibacterium sp000771875", "ani": 92.3834, "matched_fragments": 618, "total_fragments": 867, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Gallibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001678495.1", "gtdb_species": "s__Gallibacterium salpingitidis", "ani": 79.9816, "matched_fragments": 370, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gallibacterium", "anatis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }