{ "type": "genome", "identifier": "GCF_900450765.1", "organism": "Fusobacterium necrogenes", "title": "Fusobacterium necrogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900450765.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3649021", "wgs_master": "UGGU00000000.1", "refseq_category": "reference genome", "taxid": "858", "species_taxid": "858", "organism_name": "Fusobacterium necrogenes", "infraspecific_name": "strain=NCTC10723", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "42650_B02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900450765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/450/765/GCF_900450765.1_42650_B02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2015236", "genome_size_ungapped": "2015236", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900450765.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1903", "protein_coding_gene_count": "1801", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Fusobacterium necrogenes" ], "sample_taxid": [ "858" ], "sample_host_organism": [ "Duck" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "0.540 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2015236", "Number of Sequences": "5", "Longest Sequences (bp)": "1927475", "N50 (bp)": "1927475", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.2", "Number of CDSs": "1814", "Average Protein Length": "332.9", "Coding Ratio (%)": "89.9", "Number of rRNAs": "19", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fusobacterium necrogenes", "strain": "strain=NCTC10723", "accession": "GCA_900450765.1", "taxid": 858, "species_taxid": 858, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 668, "total_fragments": 669, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fusobacterium ulcerans", "strain": "strain=ATCC 49185", "accession": "GCA_003019675.1", "taxid": 861, "species_taxid": 861, "relation_to_type": "type", "validated": true, "ani": 78.8681, "matched_fragments": 253, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium varium", "strain": "strain=NCTC10560", "accession": "GCA_900637705.1", "taxid": 856, "species_taxid": 856, "relation_to_type": "type", "validated": true, "ani": 78.6745, "matched_fragments": 272, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium necrophorum subsp. necrophorum", "strain": "strain=ATCC 25286", "accession": "GCA_004006635.1", "taxid": 143388, "species_taxid": 859, "relation_to_type": "type", "validated": true, "ani": 78.6527, "matched_fragments": 59, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium 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"GCA_000479045.1", "taxid": 188913, "species_taxid": 188913, "relation_to_type": "type", "validated": true, "ani": 76.6721, "matched_fragments": 149, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium necrophorum", "strain": "strain=ATCC 25286", "accession": "GCA_900104395.1", "taxid": 859, "species_taxid": 859, "relation_to_type": "type", "validated": true, "ani": 76.6521, "matched_fragments": 55, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=ChDC F128", "accession": "GCA_000292935.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 76.6151, "matched_fragments": 132, "total_fragments": 669, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900450765.1", 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.857, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fusobacterium", "necrogenes" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }