{ "type": "genome", "identifier": "GCF_900452285.1", "organism": "Kurthia zopfii", "title": "Kurthia zopfii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900452285.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4434521", "wgs_master": "UGNP00000000.1", "refseq_category": "reference genome", "taxid": "1650", "species_taxid": "1650", "organism_name": "Kurthia zopfii", "infraspecific_name": "strain=NCTC10597", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50861_B01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900452285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/452/285/GCF_900452285.1_50861_B01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2991625", "genome_size_ungapped": "2991625", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900452285.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "3023", "protein_coding_gene_count": "2882", "non_coding_gene_count": "110", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Kurthia zopfii" ], "sample_taxid": [ "1650" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.836 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2991625", "Number of Sequences": "2", "Longest Sequences (bp)": "2985871", "N50 (bp)": "2985871", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.9", "Number of CDSs": "2944", "Average Protein Length": "289.4", "Coding Ratio (%)": "85.4", "Number of rRNAs": "27", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kurthia zopfii", "strain": "strain=NCTC10597", "accession": "GCA_900452285.1", "taxid": 1650, "species_taxid": 1650, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 995, "total_fragments": 996, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kurthia zopfii", "strain": "strain=ATCC 33403", "accession": "GCA_003143955.1", "taxid": 1650, "species_taxid": 1650, "relation_to_type": "type", "validated": true, "ani": 99.91, "matched_fragments": 903, "total_fragments": 996, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kurthia zopfii", "strain": "strain=DSM 20580", "accession": "GCA_004363595.1", "taxid": 1650, "species_taxid": 1650, "relation_to_type": "type", "validated": true, "ani": 99.9013, "matched_fragments": 910, "total_fragments": 996, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kurthia zopfii", "strain": "strain=NBRC 101529", "accession": "GCA_007989745.1", "taxid": 1650, "species_taxid": 1650, "relation_to_type": "type", "validated": true, "ani": 99.8472, "matched_fragments": 863, "total_fragments": 996, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kurthia gibsonii", "strain": "strain=NBRC 15534", "accession": "GCA_006539985.1", "taxid": 33946, 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