{ "type": "genome", "identifier": "GCF_900452395.1", "organism": "Legionella beliardensis", "title": "Legionella beliardensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900452395.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412675", "wgs_master": "UGNV00000000.1", "refseq_category": "reference genome", "taxid": "91822", "species_taxid": "91822", "organism_name": "Legionella beliardensis", "infraspecific_name": "strain=NCTC13315", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50618_B01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900452395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/452/395/GCF_900452395.1_50618_B01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3538304", "genome_size_ungapped": "3538304", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900452395.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3175", "protein_coding_gene_count": "3070", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella beliardensis" ], "sample_taxid": [ "91822" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3538304", "Number of Sequences": "6", "Longest Sequences (bp)": "3170434", "N50 (bp)": "3170434", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "3130", "Average Protein Length": "322.5", "Coding Ratio (%)": "85.6", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella beliardensis", "strain": "strain=NCTC13315", "accession": "GCA_900452395.1", "taxid": 91822, "species_taxid": 91822, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1174, "total_fragments": 1176, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella busanensis", "strain": "strain=NCTC13316", "accession": "GCA_900461525.1", "taxid": 190655, "species_taxid": 190655, "relation_to_type": "type", "validated": true, "ani": 79.4371, "matched_fragments": 485, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella gresilensis", "strain": "strain=Greoux 11D13", "accession": "GCA_900639865.1", "taxid": 91823, "species_taxid": 91823, "relation_to_type": "type", "validated": true, "ani": 78.8196, "matched_fragments": 478, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella worsleiensis", "strain": "strain=NCTC12377", "accession": "GCA_900453045.1", "taxid": 45076, "species_taxid": 45076, "relation_to_type": "type", "validated": true, "ani": 78.6678, "matched_fragments": 66, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella clemsonensis", "strain": "strain=CDC-D5610", "accession": "GCA_002240035.1", "taxid": 1867846, "species_taxid": 1867846, "relation_to_type": "type", "validated": true, "ani": 77.8091, "matched_fragments": 104, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella worsleiensis", "strain": "strain=ATCC 49508", "accession": "GCA_001467535.1", "taxid": 45076, "species_taxid": 45076, "relation_to_type": "type", "validated": true, "ani": 77.7672, "matched_fragments": 59, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 77.7553, "matched_fragments": 104, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cincinnatiensis", "strain": "strain=NCTC12438", "accession": "GCA_900452415.1", "taxid": 28085, "species_taxid": 28085, "relation_to_type": "type", "validated": true, "ani": 77.5236, "matched_fragments": 108, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cincinnatiensis", "strain": "strain=CDC#72-OH-14", "accession": "GCA_001467545.1", "taxid": 28085, "species_taxid": 28085, "relation_to_type": "type", "validated": true, "ani": 77.2319, "matched_fragments": 103, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella birminghamensis", "strain": "strain=1407-AL-H", "accession": "GCA_900639775.1", "taxid": 28083, "species_taxid": 28083, "relation_to_type": "type", "validated": true, "ani": 77.0646, "matched_fragments": 69, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=ATCC 49506", "accession": "GCA_001467895.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 77.0605, "matched_fragments": 103, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lansingensis", "strain": "strain=ATCC 49751", "accession": "GCA_001467795.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 76.8664, "matched_fragments": 89, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 76.7683, "matched_fragments": 103, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tatlockia micdadei", "strain": "strain=ATCC 33218", "accession": "GCA_900102325.1", "taxid": 451, "species_taxid": 451, "relation_to_type": "type", "validated": true, "ani": 76.4784, "matched_fragments": 78, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900452395.1", "gtdb_species": "s__Legionella_C beliardensis", "ani": 100.0, "matched_fragments": 1174, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900461525.1", "gtdb_species": "s__Legionella_C busanensis", "ani": 79.4577, "matched_fragments": 487, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900639865.1", "gtdb_species": "s__Legionella_C gresilensis", "ani": 78.8233, "matched_fragments": 477, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900452515.1", "gtdb_species": "s__Legionella_C birminghamensis", "ani": 78.1912, "matched_fragments": 75, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000953655.1", "gtdb_species": "s__Tatlockia hackeliae", "ani": 77.9543, "matched_fragments": 104, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001467535.1", "gtdb_species": "s__Legionella worsleiensis", "ani": 77.7672, "matched_fragments": 59, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002240035.1", "gtdb_species": "s__Tatlockia clemsonensis", "ani": 77.7086, "matched_fragments": 103, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900452415.1", "gtdb_species": "s__Legionella cincinnatiensis", "ani": 77.5236, "matched_fragments": 108, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900187355.1", "gtdb_species": "s__Tatlockia lansingensis", "ani": 77.4594, "matched_fragments": 94, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001467895.1", "gtdb_species": "s__Tatlockia nautarum", "ani": 77.0605, "matched_fragments": 103, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001467945.1", "gtdb_species": "s__Legionella parisiensis", "ani": 76.9901, "matched_fragments": 84, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001465875.1", "gtdb_species": "s__Legionella saoudiensis", "ani": 76.7404, "matched_fragments": 84, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003989735.1", "gtdb_species": "s__Legionella sp003989735", "ani": 76.5643, "matched_fragments": 82, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013697725.1", "gtdb_species": "s__Tatlockia sp013697725", "ani": 76.553, "matched_fragments": 78, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.324, "cell_length": 0.259, "doubling_h": 0.38, "growth_tmp": 37.0, "optimum_tmp": 33.77, "optimum_ph": 6.9, "genome_size": 3482612.786, "gc_content": 38.268, "coding_genes": 2803.262, "rRNA16S_genes": 3.5, "tRNA_genes": 42.766, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "beliardensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }