{ "type": "genome", "identifier": "GCF_900452715.1", "organism": "Legionella moravica", "title": "Legionella moravica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900452715.1", "bioproject": "PRJNA224116", "biosample": "SAMEA44551168", "wgs_master": "UGOG00000000.1", "refseq_category": "reference genome", "taxid": "39962", "species_taxid": "39962", "organism_name": "Legionella moravica", "infraspecific_name": "strain=NCTC12239", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "51342_H02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900452715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/452/715/GCF_900452715.1_51342_H02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3825910", "genome_size_ungapped": "3825910", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900452715.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3218", "protein_coding_gene_count": "3141", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella moravica" ], "sample_taxid": [ "39962" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czechoslovakia" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3825910", "Number of Sequences": "2", "Longest Sequences (bp)": "3750070", "N50 (bp)": "3750070", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "3174", "Average Protein Length": "347.5", "Coding Ratio (%)": "86.5", "Number of rRNAs": "9", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella moravica", "strain": "strain=NCTC12239", "accession": "GCA_900452715.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1274, "total_fragments": 1275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella moravica", "strain": "strain=DSM 19234", "accession": "GCA_000423305.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 99.9545, "matched_fragments": 1224, "total_fragments": 1275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella moravica", "strain": "strain=ATCC 43877", "accession": "GCA_001467865.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 99.9378, "matched_fragments": 1232, "total_fragments": 1275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella bononiensis", "strain": "strain=30cs62", "accession": "GCA_016786415.1", "taxid": 2793102, "species_taxid": 2793102, "relation_to_type": "type", "validated": true, "ani": 84.0025, "matched_fragments": 886, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", 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"GCA_022870105.1", "taxid": 91891, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 78.7141, "matched_fragments": 255, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lytica", "strain": "strain=PCM 2298", "accession": "GCA_023921225.1", "taxid": 96232, "species_taxid": 96232, "relation_to_type": "type", "validated": true, "ani": 78.6973, "matched_fragments": 152, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000423305.1", "gtdb_species": "s__Legionella moravica", "ani": 99.9545, "matched_fragments": 1224, "total_fragments": 1275, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", 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