{ "type": "genome", "identifier": "GCF_900452855.1", "organism": "Vibrio anguillarum", "title": "Vibrio anguillarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900452855.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4504064", "wgs_master": "UGPJ00000000.1", "refseq_category": "na", "taxid": "55601", "species_taxid": "55601", "organism_name": "Vibrio anguillarum", "infraspecific_name": "strain=NCTC12159", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "51765_A01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900452855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/452/855/GCF_900452855.1_51765_A01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4416484", "genome_size_ungapped": "4416484", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-08", "total_gene_count": "3995", "protein_coding_gene_count": "3741", "non_coding_gene_count": "142", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio anguillarum" ], "sample_taxid": [ "55601" ], "sample_host_organism": [ "Fish (Cod)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.245 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4416484", "Number of Sequences": "6", "Longest Sequences (bp)": "3192191", "N50 (bp)": "3192191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.4", "Number of CDSs": "3896", "Average Protein Length": "324.0", "Coding Ratio (%)": "85.7", "Number of rRNAs": "31", "Number of tRNAs": "107", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio anguillarum", "strain": "strain=NCTC12159", "accession": "GCA_900452855.1", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1465, "total_fragments": 1468, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": "GCA_001989995.2", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 99.9001, "matched_fragments": 1272, "total_fragments": 1468, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio qinghaiensis", "strain": "strain=Q67", "accession": "GCA_002257545.1", "taxid": 2025808, "species_taxid": 2025808, "relation_to_type": "type", "validated": true, "ani": 95.9655, "matched_fragments": 1120, "total_fragments": 1468, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 82.3851, "matched_fragments": 780, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 82.3287, "matched_fragments": 744, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.8922, "matched_fragments": 733, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.6879, "matched_fragments": 319, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 2711221, "relation_to_type": "type", "validated": true, "ani": 79.6466, "matched_fragments": 371, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.574, "matched_fragments": 460, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cyclitrophicus", "strain": "strain=LMG 21359", "accession": "GCA_024347435.1", "taxid": 47951, "species_taxid": 47951, "relation_to_type": "type", "validated": true, "ani": 79.5494, "matched_fragments": 340, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 79.5287, "matched_fragments": 378, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tarriae", "strain": "strain=2521-89", "accession": "GCA_002216685.1", "taxid": 2014742, "species_taxid": 2014742, "relation_to_type": "type", "validated": true, "ani": 79.4695, "matched_fragments": 472, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 79.463, "matched_fragments": 375, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 79.3257, "matched_fragments": 343, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 79.1568, "matched_fragments": 385, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cholerae", "strain": "strain=ATCC 14035", "accession": "GCA_000621645.1", "taxid": 666, "species_taxid": 666, "relation_to_type": "type", "validated": true, "ani": 79.0331, "matched_fragments": 468, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio paracholerae", "strain": "strain=EDC-792", "accession": "GCA_017169525.1", "taxid": 650003, "species_taxid": 650003, "relation_to_type": "type", "validated": true, "ani": 78.8597, "matched_fragments": 439, "total_fragments": 1468, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_001989995.2", "gtdb_species": "s__Vibrio anguillarum", "ani": 99.9001, "matched_fragments": 1272, "total_fragments": 1468, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 96.3484, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 121, "status": "conclusive" }, { "accession": "GCA_000257205.1", "gtdb_species": "s__Vibrio ordalii", "ani": 96.1525, "matched_fragments": 942, "total_fragments": 1468, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 96.3484, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", 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