{ "type": "genome", "identifier": "GCF_900452985.1", "organism": "Mannheimia haemolytica", "title": "Mannheimia haemolytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900452985.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3881067", "wgs_master": "UGPL00000000.1", "refseq_category": "na", "taxid": "75985", "species_taxid": "75985", "organism_name": "Mannheimia haemolytica", "infraspecific_name": "strain=NCTC9380", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "44927_C02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900452985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/452/985/GCF_900452985.1_44927_C02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2833415", "genome_size_ungapped": "2833415", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "2930", "protein_coding_gene_count": "2733", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mannheimia haemolytica" ], "sample_taxid": [ "75985" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.796 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2833415", "Number of Sequences": "8", "Longest Sequences (bp)": "2614544", "N50 (bp)": "2614544", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.1", "Number of CDSs": "2902", "Average Protein Length": "287.6", "Coding Ratio (%)": "88.4", "Number of rRNAs": "20", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mannheimia haemolytica", "strain": "strain=NCTC9380", "accession": "GCA_900452985.1", "taxid": 75985, "species_taxid": 75985, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 932, "total_fragments": 941, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mannheimia haemolytica", "strain": "strain=DSM 10531", "accession": "GCA_004342115.1", "taxid": 75985, "species_taxid": 75985, "relation_to_type": "type", "validated": true, "ani": 99.94, "matched_fragments": 820, "total_fragments": 941, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mannheimia ovis", "strain": "strain=ZY170218", "accession": "GCA_009828705.1", "taxid": 2679994, "species_taxid": 2679994, "relation_to_type": "type", "validated": true, "ani": 83.9078, "matched_fragments": 542, "total_fragments": 941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia varigena", "strain": "strain=177", "accession": "GCA_013377235.1", "taxid": 85404, "species_taxid": 85404, "relation_to_type": "type", "validated": true, "ani": 82.9089, "matched_fragments": 573, "total_fragments": 941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia bovis", "strain": "strain=ZY190616", "accession": "GCA_014541205.1", "taxid": 2770636, "species_taxid": 2770636, "relation_to_type": "type", "validated": true, "ani": 82.8701, "matched_fragments": 557, "total_fragments": 941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia pernigra", "strain": "strain=17CN0883", "accession": "GCA_013377995.1", "taxid": 111844, "species_taxid": 111844, "relation_to_type": "type", "validated": true, "ani": 82.3442, "matched_fragments": 503, "total_fragments": 941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia granulomatis", "strain": "strain=DSM 19156", "accession": "GCA_000621105.1", "taxid": 85402, "species_taxid": 85402, "relation_to_type": "type", "validated": true, "ani": 81.385, "matched_fragments": 551, "total_fragments": 941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus equuli", "strain": "strain=NCTC8529", "accession": "GCA_900636745.1", "taxid": 718, 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