{ "type": "genome", "identifier": "GCF_900453065.1", "organism": "Listeria booriae", "title": "Listeria booriae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900453065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104307696", "wgs_master": "UGPF00000000.1", "refseq_category": "na", "taxid": "1552123", "species_taxid": "1552123", "organism_name": "Listeria booriae", "infraspecific_name": "strain=NCTC13936", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "58116_F02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900453065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/453/065/GCF_900453065.1_58116_F02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3488655", "genome_size_ungapped": "3488655", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900453065.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "3345", "protein_coding_gene_count": "3184", "non_coding_gene_count": "126", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria booriae" ], "sample_taxid": [ "1552123" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.986 MB", 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"GCA_000766145.1", "taxid": 1497681, "species_taxid": 1497681, "relation_to_type": "type", "validated": true, "ani": 82.0708, "matched_fragments": 703, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria cornellensis", "strain": "strain=FSL F6-0969", "accession": "GCA_000525855.1", "taxid": 1494961, "species_taxid": 1494961, "relation_to_type": "type", "validated": true, "ani": 81.942, "matched_fragments": 654, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria portnoyi", "strain": "strain=FSL L7-1582", "accession": "GCA_014322795.1", "taxid": 2713504, "species_taxid": 2713504, "relation_to_type": "type", "validated": true, "ani": 81.8558, "matched_fragments": 643, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria rustica", "strain": "strain=FSL W9-0585", "accession": "GCA_013820765.1", "taxid": 2713503, "species_taxid": 2713503, "relation_to_type": "type", "validated": true, "ani": 81.7851, "matched_fragments": 694, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria weihenstephanensis", "strain": "strain=FSL R9-0317", "accession": "GCA_000525955.1", "taxid": 1006155, "species_taxid": 1006155, "relation_to_type": "type", "validated": true, "ani": 81.2996, "matched_fragments": 675, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria grayi", "strain": "strain=DSM 20601", "accession": "GCA_000148995.1", "taxid": 1641, "species_taxid": 1641, "relation_to_type": "type", "validated": true, "ani": 78.1275, "matched_fragments": 96, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria monocytogenes", "strain": "strain=2014L-6256", "accession": "GCA_013625895.1", "taxid": 1639, "species_taxid": 1639, "relation_to_type": "claderef", "validated": true, 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