{ "type": "genome", "identifier": "GCF_900453175.1", "organism": "Moraxella caviae", "title": "Moraxella caviae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900453175.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4442459", "wgs_master": "UGQE00000000.1", "refseq_category": "reference genome", "taxid": "34060", "species_taxid": "34060", "organism_name": "Moraxella caviae", "infraspecific_name": "strain=NCTC10293", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "51108_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900453175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/453/175/GCF_900453175.1_51108_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2736043", "genome_size_ungapped": "2736043", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900453175.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2592", "protein_coding_gene_count": "2490", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Moraxella caviae" ], "sample_taxid": [ "34060" ], "sample_host_organism": [ "Guinea pig" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.748 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2736043", "Number of Sequences": "7", "Longest Sequences (bp)": "1314605", "N50 (bp)": "1193146", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "2477", "Average Protein Length": "300.8", "Coding Ratio (%)": "81.7", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Moraxella caviae", "strain": "strain=NCTC10293", "accession": "GCA_900453175.1", "taxid": 34060, "species_taxid": 34060, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 889, "total_fragments": 908, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Moraxella caviae", "strain": "strain=CCUG 355", "accession": "GCA_002014985.1", "taxid": 34060, "species_taxid": 34060, "relation_to_type": "type", "validated": true, "ani": 99.8874, "matched_fragments": 767, "total_fragments": 908, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Moraxella ovis", "strain": "strain=NCTC11227", "accession": "GCA_900453105.1", "taxid": 29433, "species_taxid": 29433, "relation_to_type": "type", "validated": true, "ani": 78.9659, "matched_fragments": 261, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella nasovis", "strain": "strain=ZY201115", "accession": "GCA_022701215.1", "taxid": 2904121, "species_taxid": 2904121, "relation_to_type": "type", "validated": true, "ani": 78.8852, "matched_fragments": 211, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella ovis", "strain": "strain=199/55", "accession": "GCA_001636015.1", "taxid": 29433, "species_taxid": 29433, "relation_to_type": "type", "validated": true, "ani": 78.8217, "matched_fragments": 265, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella bovoculi", "strain": "strain=237", "accession": "GCA_000696305.2", "taxid": 386891, "species_taxid": 386891, "relation_to_type": "type", "validated": true, "ani": 78.3682, "matched_fragments": 228, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella canis", "strain": "strain=CCUG 8415A", "accession": "GCA_002014965.1", "taxid": 90239, "species_taxid": 90239, "relation_to_type": "type", "validated": true, "ani": 78.288, "matched_fragments": 194, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella pluranimalium", "strain": "strain=CCUG 54913", "accession": "GCA_002014825.1", "taxid": 470453, "species_taxid": 470453, "relation_to_type": "type", "validated": 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908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella lacunata", "strain": "strain=NBRC 102154", "accession": "GCA_001591245.1", "taxid": 477, "species_taxid": 477, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7935, "matched_fragments": 216, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter halodurans", "strain": "strain=F2608", "accession": "GCA_017498075.1", "taxid": 2818439, "species_taxid": 2818439, "relation_to_type": "type", "validated": true, "ani": 76.6913, "matched_fragments": 56, "total_fragments": 908, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002014985.1", "gtdb_species": "s__Moraxella caviae", "ani": 99.8874, "matched_fragments": 767, "total_fragments": 908, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Moraxella", "caviae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }