{ "type": "genome", "identifier": "GCF_900453285.1", "organism": "Moraxella caprae", "title": "Moraxella caprae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900453285.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4530657", "wgs_master": "UGQB00000000.1", "refseq_category": "reference genome", "taxid": "90240", "species_taxid": "90240", "organism_name": "Moraxella caprae", "infraspecific_name": "strain=NCTC12877", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "52191_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900453285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/453/285/GCF_900453285.1_52191_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2761843", "genome_size_ungapped": "2761843", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900453285.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2753", "protein_coding_gene_count": "2611", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Moraxella caprae" ], "sample_taxid": [ "90240" ], "sample_host_organism": [ "Goat" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.759 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2761843", "Number of Sequences": "9", "Longest Sequences (bp)": "2654428", "N50 (bp)": "2654428", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.2", "Number of CDSs": "2715", "Average Protein Length": "286.1", "Coding Ratio (%)": "84.4", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Moraxella caprae", "strain": "strain=NCTC12877", "accession": "GCA_900453285.1", "taxid": 90240, "species_taxid": 90240, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 910, "total_fragments": 915, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Moraxella caprae", "strain": "strain=DSM 19149", "accession": "GCA_000426885.1", "taxid": 90240, "species_taxid": 90240, "relation_to_type": "type", "validated": true, "ani": 99.914, "matched_fragments": 805, "total_fragments": 915, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Moraxella bovis", "strain": "strain=CCUG 2133", "accession": "GCA_002014975.1", "taxid": 476, "species_taxid": 476, "relation_to_type": "type", "validated": true, "ani": 95.3937, "matched_fragments": 703, "total_fragments": 915, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Moraxella equi", "strain": "strain=CCUG 4950", "accession": "GCA_002027555.1", "taxid": 60442, "species_taxid": 60442, "relation_to_type": "type", "validated": true, "ani": 93.877, "matched_fragments": 642, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moraxella equi", "strain": "strain=NCTC11012", "accession": "GCA_900453335.1", "taxid": 60442, 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"matched_fragments": 272, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000426885.1", "gtdb_species": "s__Moraxella caprae", "ani": 99.914, "matched_fragments": 805, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.6695, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002014975.1", "gtdb_species": "s__Moraxella bovis", "ani": 95.3626, "matched_fragments": 704, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.6695, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900453205.1", "gtdb_species": "s__Moraxella lacunata_B", "ani": 94.2529, "matched_fragments": 738, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002027555.1", "gtdb_species": "s__Moraxella equi", "ani": 93.9047, "matched_fragments": 641, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", 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"mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000696305.2", "gtdb_species": "s__Moraxella bovoculi", "ani": 84.6061, "matched_fragments": 274, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.978, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001679005.1", "gtdb_species": "s__Moraxella nonliquefaciens", "ani": 84.2101, "matched_fragments": 556, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.004, "cell_length": 0.117, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 34.125, "optimum_ph": null, "genome_size": 2602231.0, "gc_content": 43.879, "coding_genes": 2160.856, "rRNA16S_genes": 4.0, "tRNA_genes": 48.971, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Moraxella", "caprae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }