{ "type": "genome", "identifier": "GCF_900453365.1", "organism": "Mycolicibacterium tokaiense", "title": "Mycolicibacterium tokaiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900453365.1", "bioproject": "PRJNA224116", "biosample": "SAMEA37369168", "wgs_master": "UGQT00000000.1", "refseq_category": "na", "taxid": "39695", "species_taxid": "39695", "organism_name": "Mycolicibacterium tokaiense", "infraspecific_name": "strain=NCTC10821", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "52601_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900453365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/453/365/GCF_900453365.1_52601_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6428810", "genome_size_ungapped": "6428810", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900453365.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "6269", "protein_coding_gene_count": "6029", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium tokaiense" ], "sample_taxid": [ "39695" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], 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litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 80.2498, "matched_fragments": 921, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=JCM 17423", "accession": "GCA_010731695.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 80.233, "matched_fragments": 934, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 80.2136, "matched_fragments": 755, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, "relation_to_type": "type", "validated": true, "ani": 80.0533, "matched_fragments": 645, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", "validated": true, "ani": 79.8994, "matched_fragments": 856, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 79.6837, "matched_fragments": 749, "total_fragments": 2138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", 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