{ "type": "genome", "identifier": "GCF_900453875.1", "organism": "Bergeriella denitrificans", "title": "Bergeriella denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900453875.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3879493", "wgs_master": "UGQS00000000.1", "refseq_category": "reference genome", "taxid": "494", "species_taxid": "494", "organism_name": "Bergeriella denitrificans", "infraspecific_name": "strain=NCTC10295", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "44738_H02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900453875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/453/875/GCF_900453875.1_44738_H02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2549372", "genome_size_ungapped": "2549372", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900453875.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2485", "protein_coding_gene_count": "2362", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Bergeriella denitrificans" ], "sample_taxid": [ "494" ], "sample_host_organism": [ "Rabbit" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.693 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2549372", "Number of Sequences": "6", "Longest Sequences (bp)": "1588934", "N50 (bp)": "1588934", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.5", "Number of CDSs": "2391", "Average Protein Length": "291.5", "Coding Ratio (%)": "82.0", "Number of rRNAs": "12", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 839, "total_fragments": 846, "ani_threshold": 95, 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"strain=DSM 23392", "accession": "GCA_003795365.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 84.4587, "matched_fragments": 569, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 80.845, "matched_fragments": 431, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6834, "matched_fragments": 422, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, 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