{ "type": "genome", "identifier": "GCF_900454265.1", "organism": "Nocardia brasiliensis", "title": "Nocardia brasiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454265.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4076718", "wgs_master": "UGSN00000000.1", "refseq_category": "na", "taxid": "37326", "species_taxid": "37326", "organism_name": "Nocardia brasiliensis", "infraspecific_name": "strain=NCTC11294", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "49642_B01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/265/GCF_900454265.1_49642_B01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8921451", "genome_size_ungapped": "8921451", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454265.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "8117", "protein_coding_gene_count": "7983", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia brasiliensis" ], "sample_taxid": [ "37326" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.426 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.65, "strain_heterogeneity": 42.86, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8921451", "Number of Sequences": "9", "Longest Sequences (bp)": "2859182", "N50 (bp)": "1707354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "8170", "Average Protein Length": "322.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "9", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia brasiliensis", "strain": "strain=NCTC11294", "accession": "GCA_900454265.1", "taxid": 37326, "species_taxid": 37326, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2967, "total_fragments": 2970, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia brasiliensis", "strain": "strain=NBRC 14402", "accession": "GCA_000308475.2", "taxid": 37326, "species_taxid": 37326, "relation_to_type": "suspected-type", "validated": true, "ani": 99.969, "matched_fragments": 2887, "total_fragments": 2970, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia vulneris", "strain": "strain=W9851", "accession": "GCA_000811985.1", "taxid": 1141657, "species_taxid": 1141657, "relation_to_type": "type", "validated": true, "ani": 95.8318, "matched_fragments": 2685, "total_fragments": 2970, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia vulneris", "strain": "strain=NBRC 108936", "accession": "GCA_001613425.1", "taxid": 1141657, "species_taxid": 1141657, "relation_to_type": "type", "validated": true, "ani": 95.8245, "matched_fragments": 2726, "total_fragments": 2970, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia colli", "strain": "strain=CICC 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89.7463, "matched_fragments": 2254, "total_fragments": 2970, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308715.1", "gtdb_species": "s__Nocardia tenerifensis", "ani": 84.79, "matched_fragments": 1821, "total_fragments": 2970, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001613365.1", "gtdb_species": "s__Nocardia xishanensis", "ani": 82.0078, "matched_fragments": 1378, 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