{ "type": "genome", "identifier": "GCF_900454355.1", "organism": "Pandoraea pnomenusa", "title": "Pandoraea pnomenusa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454355.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4530652", "wgs_master": "UGSG00000000.1", "refseq_category": "na", "taxid": "93220", "species_taxid": "93220", "organism_name": "Pandoraea pnomenusa", "infraspecific_name": "strain=NCTC13160", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "52184_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/355/GCF_900454355.1_52184_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5473255", "genome_size_ungapped": "5473255", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454355.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "4968", "protein_coding_gene_count": "4824", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pandoraea pnomenusa" ], "sample_taxid": [ "93220" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5473255", "Number of Sequences": "3", "Longest Sequences (bp)": "5401410", "N50 (bp)": "5401410", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "4967", "Average Protein Length": "321.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "12", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pandoraea pnomenusa", "strain": "strain=NCTC13160", "accession": "GCA_900454355.1", "taxid": 93220, "species_taxid": 93220, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1817, "total_fragments": 1823, "ani_threshold": 95, 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"GCA_902459735.1", "taxid": 2508286, "species_taxid": 2508286, "relation_to_type": "type", "validated": true, "ani": 84.8981, "matched_fragments": 1328, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea communis", "strain": "strain=LMG 31110", "accession": "GCA_902459745.1", "taxid": 2508297, "species_taxid": 2508297, "relation_to_type": "type", "validated": true, "ani": 84.8069, "matched_fragments": 1302, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea cepalis", "strain": "strain=LMG 31106", "accession": "GCA_902459665.1", "taxid": 2508294, "species_taxid": 2508294, "relation_to_type": "type", "validated": true, "ani": 84.7454, "matched_fragments": 1223, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea horticolens", "strain": "strain=LMG 31112", "accession": "GCA_902459555.1", "taxid": 2508298, "species_taxid": 2508298, "relation_to_type": "type", "validated": true, "ani": 84.6656, "matched_fragments": 1295, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea anhela", "strain": "strain=LMG 31108", "accession": "GCA_902459655.1", "taxid": 2508295, "species_taxid": 2508295, "relation_to_type": "type", "validated": true, "ani": 84.5836, "matched_fragments": 1259, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea captiosa", "strain": "strain=LMG 31118", "accession": "GCA_902459775.1", "taxid": 2508302, "species_taxid": 2508302, "relation_to_type": "type", "validated": true, "ani": 84.479, "matched_fragments": 1331, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 78.7903, "matched_fragments": 647, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 78.39, "matched_fragments": 460, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 78.3287, "matched_fragments": 531, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 78.1689, "matched_fragments": 456, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 78.0291, "matched_fragments": 382, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium commune", "strain": "strain=DSM 11901", "accession": "GCA_004362855.1", "taxid": 70586, "species_taxid": 70586, "relation_to_type": "type", "validated": true, "ani": 77.2624, "matched_fragments": 195, "total_fragments": 1823, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000767615.3", "gtdb_species": "s__Pandoraea pnomenusa", "ani": 99.9963, "matched_fragments": 1795, "total_fragments": 1823, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pandoraea", "pnomenusa" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }