{ "type": "genome", "identifier": "GCF_900454515.1", "organism": "Pasteurella bettyae", "title": "Pasteurella bettyae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454515.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2822167", "wgs_master": "UFRH00000000.1", "refseq_category": "na", "taxid": "752", "species_taxid": "752", "organism_name": "Pasteurella bettyae", "infraspecific_name": "strain=NCTC10535", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "33787_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/515/GCF_900454515.1_33787_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2342998", "genome_size_ungapped": "2342998", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454515.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "2355", "protein_coding_gene_count": "2129", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pasteurella bettyae" ], "sample_taxid": [ "752" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.657 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2342998", "Number of Sequences": "2", "Longest Sequences (bp)": "2324214", "N50 (bp)": "2324214", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "2348", "Average Protein Length": "291.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "19", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pasteurella bettyae", "strain": "strain=NCTC10535", "accession": "GCA_900454515.1", "taxid": 752, "species_taxid": 752, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 776, "total_fragments": 780, "ani_threshold": 95, "status": "conclusive" }, { 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"strain": "strain=JF4016", "accession": "GCA_011455875.1", "taxid": 653940, "species_taxid": 653940, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0879, "matched_fragments": 251, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus influenzae", "strain": "strain=FDAARGOS_1560", "accession": "GCA_020736045.1", "taxid": 727, "species_taxid": 727, "relation_to_type": "type", "validated": true, "ani": 78.8515, "matched_fragments": 207, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7726, "matched_fragments": 50, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter haemolyticus", "strain": "strain=DSM 111151", "accession": "GCA_015356115.1", "taxid": 2778911, "species_taxid": 2778911, "relation_to_type": "type", "validated": true, "ani": 78.7326, "matched_fragments": 151, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Basfia succiniciproducens", "strain": "strain=DSM 22022", "accession": "GCA_900101275.1", "taxid": 653940, "species_taxid": 653940, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5702, "matched_fragments": 254, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus seminalis", "strain": "strain=SZY H1", "accession": "GCA_006384255.1", "taxid": 2582921, "species_taxid": 2582921, "relation_to_type": "type", "validated": true, "ani": 78.5198, "matched_fragments": 187, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella canis", "strain": "strain=NCTC11621", "accession": "GCA_900454865.1", "taxid": 753, "species_taxid": 753, "relation_to_type": "type", "validated": true, "ani": 78.419, "matched_fragments": 219, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=NCTC11617", "accession": "GCA_900186835.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 78.3357, "matched_fragments": 226, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus porcinus", "strain": "strain=NM319", "accession": "GCA_901764995.1", "taxid": 51048, "species_taxid": 51048, "relation_to_type": "type", "validated": true, "ani": 78.2833, "matched_fragments": 212, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lonepinella koalarum", "strain": "strain=ATCC 700131", "accession": "GCA_004565475.1", "taxid": 53417, "species_taxid": 53417, "relation_to_type": "type", "validated": true, "ani": 77.8819, "matched_fragments": 194, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lonepinella koalarum", "strain": "strain=DSM 10053", "accession": "GCA_004339625.1", "taxid": 53417, "species_taxid": 53417, "relation_to_type": "type", "validated": true, "ani": 77.8597, "matched_fragments": 193, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000262245.1", "gtdb_species": "s__Basfia bettyae", "ani": 99.9285, "matched_fragments": 730, "total_fragments": 780, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.65", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900636745.1", "gtdb_species": "s__Actinobacillus equuli", "ani": 79.5074, "matched_fragments": 133, "total_fragments": 780, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014931395.1", "gtdb_species": "s__Haemophilus_D sp900764435", "ani": 79.2497, "matched_fragments": 205, "total_fragments": 780, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.55", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { 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