{ "type": "genome", "identifier": "GCF_900454705.1", "organism": "Pasteurella testudinis", "title": "Pasteurella testudinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454705.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4384306", "wgs_master": "UGSY00000000.1", "refseq_category": "reference genome", "taxid": "761", "species_taxid": "761", "organism_name": "Pasteurella testudinis", "infraspecific_name": "strain=NCTC12150", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50465_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/705/GCF_900454705.1_50465_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3029577", "genome_size_ungapped": "3029577", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454705.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2889", "protein_coding_gene_count": "2772", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pasteurella testudinis" ], "sample_taxid": [ "761" ], "sample_host_organism": [ "Reptile (Desert Tortoise)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3029577", "Number of Sequences": "2", "Longest Sequences (bp)": "3012322", "N50 (bp)": "3012322", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "2854", "Average Protein Length": "313.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "19", "Number of tRNAs": "60", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pasteurella testudinis", "strain": "strain=NCTC12150", "accession": "GCA_900454705.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1002, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=DSM 23072", "accession": "GCA_019633665.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 99.9098, "matched_fragments": 937, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=DSM 23072", "accession": "GCA_900176075.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 99.9098, "matched_fragments": 937, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Testudinibacter aquarius", "strain": "strain=ELNT2X", "accession": "GCA_009761355.1", "taxid": 1524974, "species_taxid": 1524974, "relation_to_type": "type", "validated": true, "ani": 82.3869, "matched_fragments": 611, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Testudinibacter aquarius", "strain": 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2816244, "species_taxid": 2816244, "relation_to_type": "type", "validated": true, "ani": 76.3505, "matched_fragments": 54, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 75.8844, "matched_fragments": 53, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 75.7017, "matched_fragments": 56, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900176075.1", "gtdb_species": 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"doubling_h": 0.0, "growth_tmp": 35.703, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2204817.066, "gc_content": 38.937, "coding_genes": 2049.235, "rRNA16S_genes": 6.0, "tRNA_genes": 55.427, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pasteurella", "testudinis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }