{ "type": "genome", "identifier": "GCF_900454845.1", "organism": "Pasteurella multocida subsp. septica", "title": "Pasteurella multocida subsp. septica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454845.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4384340", "wgs_master": "UGSV00000000.1", "refseq_category": "na", "taxid": "115545", "species_taxid": "747", "organism_name": "Pasteurella multocida subsp. septica", "infraspecific_name": "strain=NCTC11995", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50465_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/845/GCF_900454845.1_50465_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2276133", "genome_size_ungapped": "2276133", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454845.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2137", "protein_coding_gene_count": "2040", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pasteurella multocida subsp. septica" ], "sample_taxid": [ "115545" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2276133", "Number of Sequences": "2", "Longest Sequences (bp)": "2273079", "N50 (bp)": "2273079", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.5", "Number of CDSs": "2062", "Average Protein Length": "326.4", "Coding Ratio (%)": "88.7", "Number of rRNAs": "19", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pasteurella multocida subsp. septica", "strain": "strain=NCTC11995", "accession": "GCA_900454845.1", "taxid": 115545, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 756, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella multocida subsp. gallicida", "strain": "strain=NCTC10204", "accession": "GCA_900636625.1", "taxid": 123812, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 96.6447, "matched_fragments": 701, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella multocida", "strain": "strain=NCTC10322", "accession": "GCA_900187275.1", "taxid": 747, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 96.583, "matched_fragments": 704, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella multocida", "strain": "strain=ATCC 43137", "accession": "GCA_000754275.1", "taxid": 747, "species_taxid": 747, "relation_to_type": "type", "validated": true, "ani": 96.5474, "matched_fragments": 706, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pasteurella canis", "strain": "strain=NCTC11621", "accession": "GCA_900454865.1", "taxid": 753, "species_taxid": 753, "relation_to_type": "type", "validated": true, "ani": 80.751, "matched_fragments": 455, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=NCTC11617", "accession": "GCA_900186835.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 80.5551, "matched_fragments": 431, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter trehalosifermentans", "strain": "strain=H1987082031", "accession": "GCA_002000545.1", "taxid": 1908263, "species_taxid": 1908263, "relation_to_type": "type", "validated": true, "ani": 77.4711, "matched_fragments": 174, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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