{ "type": "genome", "identifier": "GCF_900454955.1", "organism": "Prevotella disiens", "title": "Prevotella disiens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900454955.1", "bioproject": "PRJNA224116", "biosample": "SAMEA80458918", "wgs_master": "UGTL00000000.1", "refseq_category": "reference genome", "taxid": "28130", "species_taxid": "28130", "organism_name": "Prevotella disiens", "infraspecific_name": "strain=NCTC11157", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "53421_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900454955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/454/955/GCF_900454955.1_53421_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3051352", "genome_size_ungapped": "3051352", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900454955.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2621", "protein_coding_gene_count": "2465", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella disiens" ], "sample_taxid": [ "28130" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "disease" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.857 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3051352", "Number of Sequences": "6", "Longest Sequences (bp)": "2402153", "N50 (bp)": "2402153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "2518", "Average Protein Length": "341.2", "Coding Ratio (%)": "84.5", "Number of rRNAs": "12", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella disiens", "strain": "strain=NCTC11157", "accession": "GCA_900454955.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1013, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella disiens", "strain": "strain=JCM 6334", "accession": "GCA_000613345.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 99.8614, "matched_fragments": 845, "total_fragments": 1013, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella disiens", "strain": "strain=ATCC 29426", "accession": "GCA_000467875.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 99.7414, "matched_fragments": 766, "total_fragments": 1013, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella ihumii", "strain": "strain=Marseille-P3385", "accession": "GCA_900155655.1", "taxid": 1917878, "species_taxid": 1917878, "relation_to_type": "type", "validated": true, "ani": 84.259, "matched_fragments": 386, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 82.2738, "matched_fragments": 92, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.6542, "matched_fragments": 388, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.5031, "matched_fragments": 176, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.43, "matched_fragments": 377, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 80.4255, "matched_fragments": 343, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.3867, "matched_fragments": 371, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 79.9979, "matched_fragments": 356, "total_fragments": 1013, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000613345.1", "gtdb_species": "s__Prevotella disiens", "ani": 99.8614, "matched_fragments": 845, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_900155655.1", "gtdb_species": "s__Prevotella ihumii", "ani": 84.308, "matched_fragments": 388, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000378745.1", "gtdb_species": "s__Prevotella amnii", "ani": 83.6898, "matched_fragments": 139, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018127925.1", "gtdb_species": "s__Prevotella melaninogenica_C", "ani": 81.9251, "matched_fragments": 153, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000144405.1", "gtdb_species": "s__Prevotella melaninogenica", "ani": 81.0651, "matched_fragments": 136, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.46", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 36, "status": "-" }, { "accession": "GCF_001953955.1", "gtdb_species": "s__Prevotella intermedia", "ani": 80.6524, "matched_fragments": 385, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", 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"GCF_000613945.1", "gtdb_species": "s__Prevotella falsenii", "ani": 79.9984, "matched_fragments": 357, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000220255.1", "gtdb_species": "s__Prevotella pallens", "ani": 79.8959, "matched_fragments": 317, "total_fragments": 1013, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCF_000220235.1", "gtdb_species": "s__Prevotella nigrescens", 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "disiens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }