{ "type": "genome", "identifier": "GCF_900455015.1", "organism": "Proteus penneri", "title": "Proteus penneri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900455015.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2548146", "wgs_master": "UGTQ00000000.1", "refseq_category": "na", "taxid": "102862", "species_taxid": "102862", "organism_name": "Proteus penneri", "infraspecific_name": "strain=NCTC12737", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "28265_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900455015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/455/015/GCF_900455015.1_28265_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3907378", "genome_size_ungapped": "3907378", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900455015.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "3626", "protein_coding_gene_count": "3366", "non_coding_gene_count": "110", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Proteus penneri" ], "sample_taxid": [ "102862" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3907378", "Number of Sequences": "9", "Longest Sequences (bp)": "3829751", "N50 (bp)": "3829751", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "3599", "Average Protein Length": "306.4", "Coding Ratio (%)": "84.7", "Number of rRNAs": "22", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Proteus penneri", "strain": "strain=NCTC12737", "accession": "GCA_900455015.1", "taxid": 102862, "species_taxid": 102862, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1297, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Proteus penneri", "strain": "strain=FDAARGOS_874", "accession": "GCA_016028675.1", "taxid": 102862, "species_taxid": 102862, "relation_to_type": "type", "validated": true, "ani": 99.5011, "matched_fragments": 1216, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Proteus penneri", "strain": "strain=ATCC 33519", "accession": "GCA_003144535.1", "taxid": 102862, "species_taxid": 102862, "relation_to_type": "type", "validated": true, "ani": 99.4993, "matched_fragments": 1191, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Proteus faecis", "strain": "strain=TJ1636", "accession": "GCA_003144395.1", "taxid": 2050967, "species_taxid": 2050967, "relation_to_type": "type", "validated": true, "ani": 93.892, "matched_fragments": 1120, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus columbae", "strain": "strain=08MAS2615", "accession": "GCA_002777965.1", "taxid": 1987580, 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"validated": true, "ani": 91.7778, "matched_fragments": 1113, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hafnia paralvei", "strain": "strain=ATCC 29927", "accession": "GCA_023698525.1", "taxid": 546367, "species_taxid": 546367, "relation_to_type": "type", "validated": true, "ani": 78.848, "matched_fragments": 132, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bonaserana", "strain": "strain=H11b", "accession": "GCA_019049675.1", "taxid": 2816248, "species_taxid": 2816248, "relation_to_type": "type", "validated": true, "ani": 78.2815, "matched_fragments": 92, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus kleinii", "strain": "strain=DSM 23513", "accession": "GCA_025384885.1", "taxid": 768034, "species_taxid": 768034, "relation_to_type": "type", "validated": true, "ani": 77.6983, "matched_fragments": 200, 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