{ "type": "genome", "identifier": "GCF_900455615.1", "organism": "Ectopseudomonas oleovorans", "title": "Ectopseudomonas oleovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900455615.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3871776", "wgs_master": "UGUV00000000.1", "refseq_category": "na", "taxid": "301", "species_taxid": "301", "organism_name": "Ectopseudomonas oleovorans", "infraspecific_name": "strain=NCTC10692", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "44343_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900455615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/455/615/GCF_900455615.1_44343_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5049026", "genome_size_ungapped": "5049026", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900455615.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4892", "protein_coding_gene_count": "4531", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Ectopseudomonas oleovorans" ], "sample_taxid": [ "301" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.401 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5049026", "Number of Sequences": "5", "Longest Sequences (bp)": "4577944", "N50 (bp)": "4577944", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "4925", "Average Protein Length": "296.6", "Coding Ratio (%)": "86.8", "Number of rRNAs": "12", "Number of tRNAs": "69", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas oleovorans", "strain": "strain=NCTC10692", "accession": "GCA_900455615.1", "taxid": 301, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1669, "total_fragments": 1680, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": "GCA_002197815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 99.9496, "matched_fragments": 1563, "total_fragments": 1680, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 99.9423, "matched_fragments": 1562, "total_fragments": 1680, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 93.6427, "matched_fragments": 1258, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 93.5718, "matched_fragments": 1218, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 92.3842, "matched_fragments": 1228, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 92.3732, "matched_fragments": 1231, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sediminis", "strain": "strain=PI11", "accession": "GCA_002741105.1", "taxid": 1691904, "species_taxid": 1691904, "relation_to_type": "type", "validated": true, "ani": 91.0634, "matched_fragments": 1173, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 90.7184, "matched_fragments": 1192, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 90.717, "matched_fragments": 1198, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": 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