{
    "type": "genome",
    "identifier": "GCF_900455735.1",
    "organism": "Rhodococcus wratislaviensis",
    "title": "Rhodococcus wratislaviensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900455735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104062568",
        "wgs_master": "UAUI00000000.1",
        "refseq_category": "na",
        "taxid": "44752",
        "species_taxid": "44752",
        "organism_name": "Rhodococcus wratislaviensis",
        "infraspecific_name": "strain=NCTC13229",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/30",
        "asm_name": "55312_C01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900455735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/455/735/GCF_900455735.1_55312_C01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7777377",
        "genome_size_ungapped": "7777377",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900455735.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "7161",
        "protein_coding_gene_count": "6976",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-30",
    "dateModified": "2018-06-30",
    "datePublished": "2018-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodococcus wratislaviensis"
        ],
        "sample_taxid": [
            "44752"
        ],
        "sample_host_organism": [
            "environmental"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.122 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7777377",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "1389301",
        "N50 (bp)": "377167",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "7144",
        "Average Protein Length": "327.7",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "12",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodococcus wratislaviensis",
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                "species_taxid": 44752,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2574,
                "total_fragments": 2579,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodococcus wratislaviensis",
                "strain": "strain=NBRC 100605",
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                "relation_to_type": "suspected-type",
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                "matched_fragments": 2388,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_012396235.1",
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                "species_taxid": 37919,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "relation_to_type": "type",
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                "ani": 94.2989,
                "matched_fragments": 1933,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus koreensis",
                "strain": "strain=NBRC 100607",
                "accession": "GCA_001894845.1",
                "taxid": 99653,
                "species_taxid": 99653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0573,
                "matched_fragments": 2078,
                "total_fragments": 2579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus pseudokoreensis",
                "strain": "strain=R79",
                "accession": "GCA_017068395.1",
                "taxid": 2811421,
                "species_taxid": 2811421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8953,
                "matched_fragments": 2063,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus jostii",
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                "accession": "GCA_900105375.1",
                "taxid": 132919,
                "species_taxid": 132919,
                "relation_to_type": "type",
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                "ani": 90.5385,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus jostii",
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                "species_taxid": 132919,
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                "ani": 90.4468,
                "matched_fragments": 2040,
                "total_fragments": 2579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella defluvii",
                "strain": "strain=Ca11",
                "accession": "GCA_000738775.1",
                "taxid": 1323361,
                "species_taxid": 1323361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9784,
                "matched_fragments": 806,
                "total_fragments": 2579,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_900455735.1",
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                "matched_fragments": 2574,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_012396235.1",
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                "total_fragments": 2579,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_900105905.1",
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            },
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                "accession": "GCF_000010805.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_006704125.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "rRNA16S_genes": 4.1,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "wratislaviensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}