{ "type": "genome", "identifier": "GCF_900455865.1", "organism": "Roseomonas gilardii subsp. rosea", "title": "Roseomonas gilardii subsp. rosea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900455865.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412674", "wgs_master": "UGVO00000000.1", "refseq_category": "na", "taxid": "243956", "species_taxid": "257708", "organism_name": "Roseomonas gilardii subsp. rosea", "infraspecific_name": "strain=NCTC13290", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50618_A01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900455865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/455/865/GCF_900455865.1_50618_A01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4128143", "genome_size_ungapped": "4128143", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900455865.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3821", "protein_coding_gene_count": "3700", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas gilardii subsp. rosea" ], "sample_taxid": [ "243956" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "disease" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Houston, TX" 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"accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 79.9648, "matched_fragments": 644, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas pecuniae", "strain": "strain=DSM 25622", "accession": "GCA_014199205.1", "taxid": 693023, "species_taxid": 693023, "relation_to_type": "type", "validated": true, "ani": 79.8356, "matched_fragments": 690, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 79.5473, "matched_fragments": 680, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, 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506, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001941945.1", "gtdb_species": "s__Roseomonas gilardii", "ani": 96.4817, "matched_fragments": 1274, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.77", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_000622225.1", "gtdb_species": "s__Roseomonas mucosa", "ani": 93.2427, "matched_fragments": 1234, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, 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