{ "type": "genome", "identifier": "GCF_900457435.1", "organism": "Sphingobacterium spiritivorum", "title": "Sphingobacterium spiritivorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900457435.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3696436", "wgs_master": "UGYY00000000.1", "refseq_category": "na", "taxid": "258", "species_taxid": "258", "organism_name": "Sphingobacterium spiritivorum", "infraspecific_name": "strain=NCTC11386", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "43295_C02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900457435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/457/435/GCF_900457435.1_43295_C02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5138967", "genome_size_ungapped": "5138967", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900457435.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "4369", "protein_coding_gene_count": "4284", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium spiritivorum" ], "sample_taxid": [ "258" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.450 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5138967", "Number of Sequences": "2", "Longest Sequences (bp)": "5136864", "N50 (bp)": "5136864", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "4303", "Average Protein Length": "354.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "12", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=NCTC11386", "accession": "GCA_900457435.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1710, "total_fragments": 1712, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=FDAARGOS_1144", "accession": "GCA_016725645.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9998, "matched_fragments": 1710, "total_fragments": 1712, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobacterium spiritivorum", "strain": "strain=ATCC 33861", "accession": "GCA_000143765.1", "taxid": 258, "species_taxid": 258, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9896, "matched_fragments": 1693, "total_fragments": 1712, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobacterium phlebotomi", "strain": "strain=SSI9", "accession": "GCA_008180195.1", "taxid": 2605433, "species_taxid": 2605433, "relation_to_type": "type", "validated": true, "ani": 80.1323, "matched_fragments": 135, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium lactis", "strain": "strain=DSM 22361", "accession": "GCA_011046555.1", "taxid": 797291, "species_taxid": 797291, "relation_to_type": "type", "validated": true, "ani": 79.8784, "matched_fragments": 148, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium lactis", "strain": "strain=DSM 22361", "accession": "GCA_900107985.1", "taxid": 797291, "species_taxid": 797291, "relation_to_type": "type", "validated": true, "ani": 79.3055, "matched_fragments": 143, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium thalpophilum", "strain": "strain=NCTC11429", "accession": "GCA_901482695.1", "taxid": 259, "species_taxid": 259, "relation_to_type": "type", "validated": true, "ani": 78.557, "matched_fragments": 180, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium thalpophilum", "strain": "strain=DSM 11723", "accession": "GCA_000686625.1", "taxid": 259, "species_taxid": 259, "relation_to_type": "type", "validated": true, "ani": 78.1463, "matched_fragments": 176, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium lumbrici", "strain": "strain=1.3611", "accession": "GCA_006476045.1", "taxid": 2559600, "species_taxid": 2559600, "relation_to_type": "type", "validated": true, "ani": 78.0441, "matched_fragments": 135, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium soli", "strain": "strain=DSM 101679", "accession": "GCA_014138555.1", "taxid": 1914757, "species_taxid": 1914757, "relation_to_type": "type", "validated": true, "ani": 78.0007, "matched_fragments": 148, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium soli", "strain": "strain=CGMCC 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"GCA_007990875.1", "taxid": 34087, "species_taxid": 34087, "relation_to_type": "type", "validated": true, "ani": 77.5296, "matched_fragments": 183, "total_fragments": 1712, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000143765.1", "gtdb_species": "s__Sphingobacterium spiritivorum", "ani": 99.9896, "matched_fragments": 1693, "total_fragments": 1712, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_016724845.1", "gtdb_species": "s__Sphingobacterium spiritivorum_A", "ani": 94.6264, "matched_fragments": 1518, "total_fragments": 1712, 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