# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..716(+)	partial			WP_011117537.1	relaxase/mobilization nuclease domain-containing protein	73.8	59.0	50.9
MGA_12	LOCUS_00120	sequence2:8726..8950(-)	frameshift		8616,8994,9148,8772	WP_001118675.1	trehalose operon repressor	74.3	22.7	49.1
MGA_13	LOCUS_00130	sequence2:8983..9144(-)	frameshift		8994,9148,8772	WP_001118675.1	trehalose operon repressor	94.3	20.7	74.0
MGA_14	LOCUS_00140	sequence2:9255..9431(-)	frameshift		9697	WP_000031490.1	alpha,alpha-phosphotrehalase	96.6	10.3	60.7
MGA_15	LOCUS_00150	sequence2:9674..9985(-)	frameshift		9696,10202,10053,10135	WP_000031490.1	alpha,alpha-phosphotrehalase	98.1	18.5	73.3
MGA_16	LOCUS_00160	sequence2:10194..10352(-)	frameshift		10051,10133,10375,10312,10200,10414	WP_000031490.1	alpha,alpha-phosphotrehalase	73.1	7.0	94.7
MGA_17	LOCUS_00170	sequence2:10376..10705(-)	frameshift		10133,10375,10200,10682,10315,10414	WP_000031490.1	alpha,alpha-phosphotrehalase	80.7	15.9	68.2
MGA_20	LOCUS_00180	sequence3:393..530(-)	frameshift		422	WP_010925589.1	recombinase family protein	93.3	37.5	85.7
MGA_21	LOCUS_00190	sequence3:1029..1598(-)	frameshift		1040,977,1022	WP_000160701.1	AAA family ATPase	98.4	68.6	98.9
MGA_23	LOCUS_00210	sequence3:3238..3390(-)	frameshift		3273,3442	WP_000690638.1	recombinase family protein	78.0	19.8	100.0
MGA_24	LOCUS_00220	sequence3:3392..3598(-)	frameshift		3273,3442	WP_000690625.1	recombinase family protein	76.5	27.1	96.2
MGA_30	LOCUS_00280	sequence3:8201..9220(-)	partial			WP_000993830.1	MDR family MFS transporter	98.2	68.5	48.9
MGA_42	LOCUS_00400	sequence3:20014..20442(+)	partial			WP_011837391.1	GNAT family protein	76.8	58.3	39.4
MGA_51	LOCUS_00490	sequence3:28144..28383(-)	partial			WP_001830605.1	LysR family transcriptional regulator	86.1	23.2	35.3
MGA_57	LOCUS_00550	sequence3:32785..34179(-)	frameshift		34178	WP_011117503.1	beta-lactam sensor/signal transducer BlaR1	100.0	79.3	97.4
MGA_58	LOCUS_00560	sequence3:34176..34541(-)	frameshift		34178	WP_011117503.1	beta-lactam sensor/signal transducer BlaR1	100.0	20.7	91.7
MGA_62	LOCUS_00600	sequence3:36752..37345(-)	partial			WP_000993830.1	MDR family MFS transporter	97.0	39.6	46.6
MGA_64	LOCUS_00620	sequence3:37783..38211(-)	frameshift		37944,37769,37724	WP_000993830.1	MDR family MFS transporter	52.1	15.4	60.8
MGA_65	LOCUS_00630	sequence3:38598..38843(-)	frameshift		38617,39005,38831	WP_000031017.1	Mph(B) family macrolide 2'-phosphotransferase	93.8	25.2	63.2
MGA_66	LOCUS_00640	sequence3:38994..39428(-)	frameshift		38840,39005	WP_000031017.1	Mph(B) family macrolide 2'-phosphotransferase	91.0	43.7	50.0
MGA_68	LOCUS_00660	sequence3:39768..40697(-)	frameshift		40819	WP_002287458.1	ABC-F type ribosomal protection protein Msr(C)	93.5	58.9	45.5
MGA_149	LOCUS_01470	sequence4:78863..80128(-)	frameshift		80111	WP_000169820.1	BglG family transcription antiterminator	90.5	60.2	32.1
MGA_150	LOCUS_01480	sequence4:80097..80723(-)	partial			WP_003243034.1	transcriptional regulator LicR	94.2	31.7	30.4
MGA_156	LOCUS_01540	sequence4:85110..86411(-)	partial			WP_010990014.1	autolysin Ami	49.9	24.2	49.1
MGA_173	LOCUS_01710	sequence4:104701..105978(+)	partial			WP_003247155.1	plipastatin non-ribosomal peptide synthetase PpsB	94.1	16.6	21.3
MGA_175	LOCUS_01730	sequence4:114198..114875(-)	partial			WP_002182762.1	4'-phosphopantetheinyl transferase superfamily protein	69.3	76.9	35.8
MGA_176	LOCUS_01740	sequence4:115153..115356(+)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	58.2
MGA_187	LOCUS_01850	sequence4:127330..127890(-)	frameshift		127891	WP_011024407.1	iron ABC transporter permease	100.0	54.9	48.1
MGA_188	LOCUS_01860	sequence4:127850..128329(-)	frameshift		127912	WP_011392937.1	iron ABC transporter permease	77.4	35.1	45.5
MGA_197	LOCUS_01950	sequence4:134685..135119(-)	partial			WP_011072119.1	MarR family transcriptional regulator	71.5	67.3	30.1
MGA_228	LOCUS_02260	sequence4:170125..170625(+)	partial			WP_000861965.1	LytTR family DNA-binding domain-containing protein	71.1	80.8	35.6
MGA_240	LOCUS_02380	sequence4:186269..187144(-)	frameshift		187235	WP_001083499.1	CitMHS family transporter	100.0	63.8	72.9
MGA_241	LOCUS_02390	sequence4:187230..187640(-)	frameshift		187235	WP_001083499.1	CitMHS family transporter	99.3	29.6	68.1
MGA_242	LOCUS_02400	sequence4:188078..188491(+)	frameshift		188046	WP_014327087.1	NADPH-dependent FMN reductase	58.4	43.5	36.2
MGA_243	LOCUS_02410	sequence4:188607..188945(-)	partial			WP_003721389.1	MerR family transcriptional regulator	71.4	62.0	41.2
MGA_244	LOCUS_02420	sequence4:189048..189254(+)	frameshift		189179	WP_011202737.1	aldo/keto reductase	61.8	12.4	69.0
MGA_245	LOCUS_02430	sequence4:189221..190051(+)	frameshift		189179	WP_011202737.1	aldo/keto reductase	98.9	80.8	64.5
MGA_255	LOCUS_02530	sequence4:198150..198623(-)	partial			WP_003437466.1	transcriptional regulator GutM	70.7	77.1	45.9
MGA_265	LOCUS_02630	sequence4:207076..207684(+)	partial			WP_003581575.1	stage II sporulation protein M	71.3	69.1	26.4
MGA_267	LOCUS_02650	sequence4:208428..208685(-)	partial			WP_041272543.1	autorepressor SdpR family transcription factor	96.5	71.9	54.9
MGA_273	LOCUS_02710	sequence4:214473..214637(+)	frameshift		214413	WP_000932073.1	ferrous iron transport protein A	94.4	68.0	68.6
MGA_274	LOCUS_02720	sequence4:214630..216045(+)	frameshift		216039	WP_000432915.1	ferrous iron transport protein B	99.2	70.5	69.2
MGA_276	LOCUS_02740	sequence4:216792..217112(+)	partial			WP_002485461.1	CDP-glycerol glycerophosphotransferase family protein	94.3	12.9	53.0
MGA_277	LOCUS_02750	sequence4:217302..219236(-)	partial			WP_011203125.1	right-handed parallel beta-helix repeat-containing protein	93.8	44.1	35.9
MGA_286	LOCUS_02840	sequence4:229202..229339(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_300	LOCUS_02980	sequence4:247656..249053(+)	frameshift		249017	WP_002470520.1	DHH family phosphoesterase	98.3	69.8	78.8
MGA_301	LOCUS_02990	sequence4:249025..249621(+)	frameshift		249020	WP_002470520.1	DHH family phosphoesterase	100.0	30.2	88.4
MGA_318	LOCUS_03160	sequence4:268258..268896(+)	partial			WP_010886457.1	mechanosensitive ion channel	97.6	38.2	28.4
MGA_322	LOCUS_03200	sequence4:274773..275348(+)	partial			WP_000762853.1	restriction endonuclease subunit S	64.4	64.9	33.3
MGA_329	LOCUS_03270	sequence4:285471..287921(+)	partial			WP_000443951.1	5-methylcytosine-specific restriction endonuclease subunit McrB	35.7	63.6	53.9
MGA_336	LOCUS_03340	sequence4:292556..292681(-)	internal_stop_codon	292751..292753(-),292811..292813(-),292868..292870(-)		WP_013530753.1	GNAT family N-acetyltransferase	87.8	24.0	61.1
MGA_362	LOCUS_03600	sequence4:322756..323259(+)	partial			WP_013098871.1	DUF805 domain-containing protein	50.3	79.3	30.2
MGA_364	LOCUS_03620	sequence4:324367..326223(-)	partial			WP_002370472.1	glycosyltransferase family A protein	44.3	57.0	29.8
MGA_365	LOCUS_03630	sequence4:326566..326823(+)	partial			WP_011948489.1	HAMP domain-containing sensor histidine kinase	92.9	26.9	40.7
MGA_388	LOCUS_03860	sequence4:351383..351907(+)	partial			WP_010989534.1	DUF3267 domain-containing protein	66.7	65.0	41.4
MGA_409	LOCUS_04070	sequence4:374881..376776(-)	partial			WP_086395912.1	DUF6359 domain-containing protein	92.7	70.9	41.4
MGA_410	LOCUS_04080	sequence4:377042..378826(+)	partial			WP_011015494.1	metallophosphoesterase family protein	65.0	58.3	24.9
MGA_426	LOCUS_04240	sequence4:393017..394015(+)	partial			WP_049769589.1	TRAP transporter large permease subunit	100.0	52.7	39.5
MGA_428	LOCUS_04260	sequence4:395036..395497(-)	partial			WP_011837648.1	helix-turn-helix transcriptional regulator	70.6	67.9	34.2
MGA_431	LOCUS_04290	sequence4:397279..397947(+)	frameshift		397863	WP_001832362.1	YitT family protein	86.9	68.4	66.3
MGA_432	LOCUS_04300	sequence4:397944..398117(+)	frameshift		397863	WP_001832362.1	YitT family protein	100.0	20.2	64.9
MGA_452	LOCUS_04500	sequence4:419732..420151(+)	partial			WP_001237629.1	hypothetical protein	74.8	76.1	37.1
MGA_453	LOCUS_04510	sequence4:420418..420963(+)	partial			WP_000540719.1	HAD-IA family hydrolase	57.5	44.8	41.3
MGA_476	LOCUS_04740	sequence4:446441..447874(+)	partial			WP_010905604.1	YhgE/Pip domain-containing protein	56.6	34.8	30.2
MGA_501	LOCUS_04990	sequence4:471312..472112(-)	frameshift		472186	WP_000570687.1	alanine/glycine:cation symporter family protein	94.7	48.1	72.6
MGA_502	LOCUS_05000	sequence4:472148..472879(-)	frameshift		472186	WP_000570687.1	alanine/glycine:cation symporter family protein	95.1	44.3	69.7
MGA_508	LOCUS_05060	sequence4:478441..479355(+)	partial			WP_011082831.1	MSCRAMM family adhesin SdrF	92.8	18.7	26.9
MGA_509	LOCUS_05070	sequence4:479455..483918(+)	frameshift,internal_stop_codon	483916..483918(+),483890..483892(+),483940..483942(+)	483888,483891,483894,483900,483951	WP_011109597.1	Ig-like domain-containing protein	72.6	64.3	30.7
MGA_510	LOCUS_05080	sequence4:483995..484768(+)	frameshift		483891,483900,483894	WP_011109597.1	Ig-like domain-containing protein	42.4	6.3	33.3
MGA_514	LOCUS_05120	sequence4:488815..490176(+)	partial			WP_000736784.1	glycine-glycine endopeptidase LytM	28.3	40.5	74.2
MGA_518	LOCUS_05160	sequence4:492271..492897(+)	partial			WP_003131606.1	TDT family transporter	99.5	63.3	32.9
MGA_568	LOCUS_05660	sequence4:547664..547855(+)	partial			WP_002494449.1	IS1182-like element ISSep1 family transposase	96.8	10.6	63.9
MGA_589	LOCUS_05870	sequence4:574077..575348(+)	internal_stop_codon	575346..575348(+)		WP_000838205.1	glucose-specific PTS transporter subunit IIBC	99.8	82.9	82.2
MGA_590	LOCUS_05880	sequence4:575454..575615(+)	internal_stop_codon	575346..575348(+)		WP_000838205.1	glucose-specific PTS transporter subunit IIBC	90.6	9.4	66.7
MGA_606	LOCUS_06040	sequence4:591495..592379(-)	partial			WP_014206209.1	aromatic acid/H+ symport family MFS transporter	91.8	59.3	41.5
MGA_607	LOCUS_06050	sequence4:592364..592843(+)	partial			WP_015706103.1	3-hydroxybenzoate 6-monooxygenase	69.2	27.5	40.9
MGA_650	LOCUS_06480	sequence4:634535..635329(+)	partial			WP_001829860.1	serine protease	77.3	74.8	45.5
MGA_670	LOCUS_06680	sequence4:656431..656685(-)	partial			WP_001797239.1	lactococcin 972 family bacteriocin	75.0	70.0	57.1
MGA_673	LOCUS_06710	sequence4:658914..659486(+)	frameshift		659465	WP_009967022.1	DUF819 domain-containing protein	96.8	46.5	61.4
MGA_674	LOCUS_06720	sequence4:659569..660111(+)	frameshift		659471	WP_009967022.1	DUF819 domain-containing protein	96.7	42.7	49.4
MGA_689	LOCUS_06870	sequence4:679193..679696(+)	partial			WP_002485515.1	MFS transporter	79.0	28.8	46.6
MGA_710	LOCUS_07080	sequence4:703339..703590(+)	partial			WP_000240663.1	thioredoxin family protein	100.0	70.3	75.9
MGA_711	LOCUS_07090	sequence4:703682..703939(+)	partial			WP_002494449.1	IS1182-like element ISSep1 family transposase	90.6	13.8	63.6
MGA_762	LOCUS_07600	sequence4:765082..766272(+)	partial			WP_011388674.1	response regulator	25.3	28.1	31.0
MGA_773	LOCUS_07710	sequence4:777856..778485(-)	frameshift,internal_stop_codon	778485..778487(-)	778496	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	97.6	44.2	71.1
MGA_783	LOCUS_07810	sequence4:786495..787358(+)	partial			WP_002485467.1	NAD(P)H-binding protein	48.4	27.4	27.7
MGA_811	LOCUS_08090	sequence4:817523..817963(+)	partial			WP_003721792.1	DUF805 domain-containing protein	64.4	74.6	29.4
MGA_842	LOCUS_08400	sequence4:842201..843955(+)	internal_stop_codon	843953..843955(+)		WP_001118725.1	nitrite reductase large subunit NirB	100.0	72.9	77.2
MGA_843	LOCUS_08410	sequence4:843968..844606(+)	internal_stop_codon	843953..843955(+)		WP_002485232.1	nitrite reductase large subunit NirB	100.0	26.5	83.0
MGA_859	LOCUS_08570	sequence4:861686..862261(+)	partial			WP_001148136.1	SH3 domain-containing protein	81.2	32.8	39.5
MGA_865	LOCUS_08630	sequence4:869320..869952(+)	internal_stop_codon	869950..869952(+)		WP_004398798.1	LLM class flavin-dependent oxidoreductase	99.5	62.0	48.8
MGA_881	LOCUS_08790	sequence4:886055..886948(+)	partial			WP_000827010.1	hypothetical protein	38.0	55.4	46.9
MGA_933	LOCUS_09310	sequence4:943410..943856(-)	frameshift		943882	WP_000659770.1	formate/nitrite transporter family protein	94.6	51.1	65.0
MGA_934	LOCUS_09320	sequence4:943862..944239(-)	frameshift		943888	WP_000659770.1	formate/nitrite transporter family protein	95.2	43.4	74.8
MGA_1186	LOCUS_11840	sequence4:1192013..1193926(+)	partial			WP_049387514.1	MSCRAMM-like protein SdrH	58.4	81.5	32.0
MGA_1439	LOCUS_14350	sequence4:1465939..1466646(+)	partial			WP_015943220.1	hypothetical protein	54.5	73.8	34.8
MGA_1440	LOCUS_14360	sequence4:1466714..1467985(+)	partial			WP_164930145.1	alcohol acetyltransferase	31.0	26.5	34.8
MGA_1514	LOCUS_15100	sequence4:1540088..1540258(+)	partial			WP_000048060.1	30S ribosomal protein S21	76.8	74.1	88.4
MGA_1549	LOCUS_15450	sequence4:1571634..1572347(+)	partial			WP_002440043.1	competence type IV pilus minor pilin ComGF	58.6	83.4	43.6
MGA_1556	LOCUS_15520	sequence4:1578968..1579186(-)	partial			WP_001244298.1	SA1362 family protein	58.3	58.3	81.0
MGA_1602	LOCUS_15980	sequence4:1622753..1624564(+)	partial			WP_000069289.1	elastin-binding protein EbpS	11.1	15.6	65.8
MGA_1730	LOCUS_17260	sequence4:1757694..1758791(-)	partial			WP_011392524.1	acyltransferase	37.5	35.4	30.3
MGA_1745	LOCUS_17410	sequence4:1779742..1779981(-)	partial			WP_001548645.1	YneF family protein	70.9	58.9	67.9
MGA_1781	LOCUS_17770	sequence4:1811698..1812231(-)	frameshift		1811624,1811730	WP_181746991.1	IS1182 family transposase	92.7	34.6	56.7
MGA_1913	LOCUS_19090	sequence4:1968364..1969251(-)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	99.0	63.1	53.4
MGA_1928	LOCUS_19240	sequence4:1983034..1983666(-)	partial			WP_000725652.1	glycerophosphodiester phosphodiesterase	98.1	73.6	35.0
MGA_2018	LOCUS_20140	sequence4:2077658..2077990(-)	internal_stop_codon	2078009..2078011(-)		WP_002439305.1	serine hydrolase domain-containing protein	97.3	27.2	60.6
MGA_2019	LOCUS_20150	sequence4:2078009..2078806(-)	internal_stop_codon	2078009..2078011(-)		WP_002439305.1	serine hydrolase domain-containing protein	83.0	54.5	55.5
MGA_2087	LOCUS_20820	sequence4:2154741..2154905(-)	frameshift		2154961	WP_001829283.1	acyltransferase family protein	98.1	8.7	71.7
MGA_2105	LOCUS_21000	sequence4:2178315..2178629(-)	internal_stop_codon	2178747..2178749(-)		WP_002485215.1	GNAT family protein	97.1	55.5	59.4
MGA_2135	LOCUS_21300	sequence4:2207285..2207785(-)	partial			WP_011082549.1	IS1182-like element ISSep1 family transposase	82.5	24.8	69.3
MGA_2171	LOCUS_21660	sequence4:2240319..2240525(-)	partial			WP_001548522.1	TM2 domain-containing protein	94.1	69.6	71.9
MGA_2200	LOCUS_21950	sequence4:2256256..2256666(-)	partial			WP_001041666.1	LysM peptidoglycan-binding domain-containing protein	97.1	35.5	60.6
MGA_2203	LOCUS_21980	sequence4:2258703..2259428(-)	partial			WP_011022612.1	CPBP family intramembrane metalloprotease	48.5	48.0	36.4
MGA_2206	LOCUS_22010	sequence4:2261416..2262006(+)	partial			WP_000825947.1	hypothetical protein	39.3	50.6	51.9
MGA_2277	LOCUS_22720	sequence4:2330754..2330885(+)	frameshift,internal_stop_codon	2330664..2330666(+)	2331032,2330879	WP_001829625.1	GrpB family protein	97.7	24.0	88.1
MGA_2438	LOCUS_24330	sequence4:2490468..2490788(-)	internal_stop_codon	2490804..2490806(-)		WP_001829442.1	hypothetical protein	100.0	62.4	56.6
MGA_2439	LOCUS_24340	sequence4:2490804..2490977(-)	internal_stop_codon	2490804..2490806(-)		WP_001829442.1	hypothetical protein	98.2	33.5	45.6
MGA_2472	LOCUS_24670	sequence4:2515848..2516573(-)	partial			WP_011229185.1	hypothetical protein	77.2	73.7	23.2
MGA_2483	LOCUS_24780	sequence4:2527513..2527743(-)	frameshift		2527726	WP_002485467.1	NAD(P)H-binding protein	76.3	11.3	74.1
MGA_2484	LOCUS_24790	sequence4:2527721..2527849(-)	frameshift		2527726	WP_002485467.1	NAD(P)H-binding protein	97.6	8.0	73.2
MGA_2489	LOCUS_24840	sequence4:2532226..2533197(+)	partial			WP_002456621.1	fatty acid desaturase	25.7	73.5	66.3
MGA_2496	LOCUS_24910	sequence4:2537307..2538275(+)	partial			WP_014207129.1	type 1 glutamine amidotransferase domain-containing protein	60.2	70.6	25.5
MGA_2497	LOCUS_24920	sequence4:2538304..2539239(+)	partial			WP_003595993.1	low temperature requirement protein A	88.7	72.9	31.8
MGA_2498	LOCUS_24930	sequence4:2539450..2539839(+)	partial			WP_011204015.1	haloacid dehalogenase type II	87.6	45.0	36.8
MGA_2507	LOCUS_25020	sequence4:2548463..2548840(-)	frameshift		2548851	WP_072362001.1	DMT family transporter	53.6	21.5	61.2
MGA_2514	LOCUS_25090	sequence4:2555250..2555606(-)	internal_stop_codon	2555625..2555627(-)		WP_000903451.1	DinB family protein	97.5	70.6	37.6
MGA_2516	LOCUS_25110	sequence4:2557028..2557234(-)	partial			WP_013097374.1	nitroreductase NfsA	89.7	25.4	45.9
MGA_2519	LOCUS_25140	sequence4:2558797..2559405(-)	partial			WP_000448918.1	alpha/beta hydrolase	98.0	71.0	23.4
MGA_2522	LOCUS_25170	sequence4:2561169..2561492(+)	frameshift		2561169	WP_003246601.1	transcriptional regulator LrpA	100.0	78.7	51.4
MGA_2545	LOCUS_25400	sequence4:2587196..2588140(+)	partial			WP_010966245.1	LacI family DNA-binding transcriptional regulator	51.9	47.5	28.6
MGA_2548	LOCUS_25430	sequence4:2590933..2591529(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	66.2	74.3	31.3
MGA_2601	LOCUS_25960	sequence4:2661700..2661996(-)	internal_stop_codon	2662015..2662017(-)		WP_000551283.1	hypoxanthine phosphoribosyltransferase	99.0	54.2	90.7
MGA_2602	LOCUS_25970	sequence4:2662015..2662239(-)	internal_stop_codon	2662015..2662017(-)		WP_001832216.1	hypoxanthine phosphoribosyltransferase	100.0	41.3	78.4
