{ "type": "genome", "identifier": "GCF_900458695.1", "organism": "Staphylococcus nepalensis", "title": "Staphylococcus nepalensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900458695.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4384059", "wgs_master": "UHDS00000000.1", "refseq_category": "na", "taxid": "214473", "species_taxid": "214473", "organism_name": "Staphylococcus nepalensis", "infraspecific_name": "strain=NCTC13834", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50305_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900458695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/458/695/GCF_900458695.1_50305_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2886495", "genome_size_ungapped": "2886495", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900458695.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "2762", "protein_coding_gene_count": "2642", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus nepalensis" ], "sample_taxid": [ "214473" ], "sample_host_organism": [ "Goat" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Nepal: Chitwan" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2886495", "Number of Sequences": "2", "Longest Sequences (bp)": "2875359", "N50 (bp)": "2875359", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.1", "Number of CDSs": "2728", "Average Protein Length": "291.9", "Coding Ratio (%)": "82.7", "Number of rRNAs": "22", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus nepalensis", "strain": "strain=NCTC13834", "accession": "GCA_900458695.1", "taxid": 214473, "species_taxid": 214473, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 959, "total_fragments": 961, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus nepalensis", "strain": "strain=CCM 7045", "accession": "GCA_014635045.1", "taxid": 214473, "species_taxid": 214473, "relation_to_type": "type", "validated": true, "ani": 99.9776, "matched_fragments": 935, "total_fragments": 961, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus nepalensis", "strain": "strain=DSM 15150", "accession": "GCA_002902745.1", "taxid": 214473, "species_taxid": 214473, "relation_to_type": "type", "validated": true, "ani": 99.6758, "matched_fragments": 765, "total_fragments": 961, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus cohnii", "strain": "strain=NCTC11041", "accession": "GCA_900458255.1", "taxid": 29382, "species_taxid": 29382, "relation_to_type": "type", "validated": true, "ani": 83.5559, "matched_fragments": 703, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus 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