{ "type": "genome", "identifier": "GCF_900458895.1", "organism": "Staphylococcus schleiferi", "title": "Staphylococcus schleiferi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900458895.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3221103", "wgs_master": "na", "refseq_category": "na", "taxid": "1295", "species_taxid": "1295", "organism_name": "Staphylococcus schleiferi", "infraspecific_name": "strain=NCTC12218", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/17", "asm_name": "GCA_900458895", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900458895.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/458/895/GCF_900458895.1_GCA_900458895", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2522243", "genome_size_ungapped": "2522243", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "2445", "protein_coding_gene_count": "2212", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-17", "dateModified": "2020-12-17", "datePublished": "2020-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus schleiferi" ], "sample_taxid": [ "1295" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2522243", "Number of Sequences": "1", "Longest Sequences (bp)": "2522243", "N50 (bp)": "2522243", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.0", "Number of CDSs": "2487", "Average Protein Length": "283.1", "Coding Ratio (%)": "83.7", "Number of rRNAs": "19", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus schleiferi", "strain": "strain=NCTC12218", "accession": "GCA_900458895.2", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 840, "total_fragments": 840, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Staphylococcus schleiferi subsp. schleiferi", "strain": "strain=NCTC 12218", "accession": "GCA_003968865.1", "taxid": 74707, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 99.9146, "matched_fragments": 758, "total_fragments": 840, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Staphylococcus schleiferi", "strain": "strain=ATCC 43808", "accession": "GCA_011137195.1", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 99.8297, "matched_fragments": 781, "total_fragments": 840, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Staphylococcus coagulans", "strain": "strain=DSM 6628", "accession": "GCA_002901995.1", "taxid": 74706, "species_taxid": 74706, "relation_to_type": "type", "validated": true, "ani": 95.0338, "matched_fragments": 711, "total_fragments": 840, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Staphylococcus pseudintermedius", "strain": "strain=LMG 22219", "accession": "GCA_001792775.2", "taxid": 283734, "species_taxid": 283734, "relation_to_type": "type", "validated": true, "ani": 80.3775, "matched_fragments": 405, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus delphini", "strain": "strain=NCTC 12225", "accession": "GCA_002902785.1", "taxid": 53344, "species_taxid": 53344, "relation_to_type": "type", "validated": true, "ani": 80.1274, "matched_fragments": 418, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus intermedius", "strain": "strain=NCTC 11048", "accession": "GCA_000308095.1", "taxid": 1285, "species_taxid": 1285, "relation_to_type": "type", "validated": true, "ani": 79.902, "matched_fragments": 383, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus lutrae", "strain": "strain=DSM 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