# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_17	LOCUS_00170	sequence1:17501..17641(+)	partial			WP_010921860.1	hypothetical protein	60.9	82.4	100.0
MGA_21	LOCUS_00190	sequence1:32476..33111(-)	frameshift		33299	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.6
MGA_22	LOCUS_00200	sequence1:33291..33581(-)	frameshift		33299	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_28	LOCUS_00260	sequence1:38875..39684(-)	frameshift		39712	WP_150880979.1	ISL3 family transposase	99.6	65.7	76.5
MGA_84	LOCUS_00810	sequence1:94763..95479(+)	internal_stop_codon	95477..95479(+),95666..95668(+),94739..94741(+)		WP_000659003.1	NAD(P)/FAD-dependent oxidoreductase	100.0	59.2	68.9
MGA_85	LOCUS_00820	sequence1:95507..95668(+)	internal_stop_codon	95477..95479(+),95666..95668(+)		WP_000659003.1	NAD(P)/FAD-dependent oxidoreductase	100.0	13.2	77.4
MGA_86	LOCUS_00830	sequence1:95996..96235(+)	frameshift,internal_stop_codon	96233..96235(+)	96265	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	100.0	16.6	87.3
MGA_87	LOCUS_00840	sequence1:96295..96540(+)	frameshift,internal_stop_codon	96233..96235(+)	96265,96523,96620	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	98.8	16.8	80.0
MGA_88	LOCUS_00850	sequence1:96709..97422(+)	frameshift		96525,96622	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	100.0	49.9	75.9
MGA_89	LOCUS_00860	sequence1:97423..97773(+)	internal_stop_codon	97771..97773(+)		WP_001275291.1	cytochrome d ubiquinol oxidase subunit II	83.6	28.6	87.6
MGA_90	LOCUS_00870	sequence1:97819..98265(+)	internal_stop_codon	97771..97773(+)		WP_001275291.1	cytochrome d ubiquinol oxidase subunit II	98.0	42.8	60.7
MGA_91	LOCUS_00880	sequence1:98252..99109(+)	frameshift		99097	WP_000884540.1	thiol reductant ABC exporter subunit CydD	99.3	49.5	67.5
MGA_92	LOCUS_00890	sequence1:99123..99371(+)	frameshift		99100	WP_000884540.1	thiol reductant ABC exporter subunit CydD	98.8	14.2	74.1
MGA_93	LOCUS_00900	sequence1:99371..99940(+)	frameshift,internal_stop_codon	99924..99926(+)	99829,99094	WP_000472825.1	thiol reductant ABC exporter subunit CydC	85.7	27.8	75.9
MGA_94	LOCUS_00910	sequence1:99930..100925(+)	frameshift,internal_stop_codon	99924..99926(+)	99835,100919	WP_000472825.1	thiol reductant ABC exporter subunit CydC	99.4	56.5	65.7
MGA_95	LOCUS_00920	sequence1:100934..101116(+)	frameshift		100919	WP_000472825.1	thiol reductant ABC exporter subunit CydC	96.7	10.0	67.2
MGA_96	LOCUS_00930	sequence1:101357..102130(-)	frameshift,internal_stop_codon	102146..102148(-)	101404	WP_000100665.1	polyprenyl synthetase family protein	95.3	75.2	69.4
MGA_116	LOCUS_01130	sequence1:123973..124449(+)	partial			WP_012775187.1	CPBP family intramembrane metalloprotease	89.2	62.0	38.7
MGA_117	LOCUS_01140	sequence1:124467..124904(+)	internal_stop_codon	124902..124904(+)		WP_010921804.1	hypothetical protein	54.5	77.5	72.2
MGA_134	LOCUS_01310	sequence1:139217..139912(-)	partial			WP_011022612.1	CPBP family intramembrane metalloprotease	79.2	73.0	26.3
MGA_148	LOCUS_01450	sequence1:159722..160381(-)	partial			WP_010921826.1	hypothetical protein	93.6	70.9	49.8
MGA_168	LOCUS_01650	sequence1:180531..180719(-)	partial			WP_000985093.1	bacteriocin immunity protein	82.3	51.0	52.9
MGA_169	LOCUS_01660	sequence1:180805..181467(-)	frameshift		181511	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	64.1
MGA_170	LOCUS_01670	sequence1:181503..181793(-)	frameshift		181517	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	26.1	85.4
MGA_177	LOCUS_01740	sequence1:187315..187986(-)	partial			WP_003138385.1	IS256-like element IS905 family transposase	100.0	57.0	71.3
MGA_178	LOCUS_01750	sequence1:188401..188691(+)	frameshift		188682,188799	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	93.6
MGA_179	LOCUS_01760	sequence1:188872..189507(+)	frameshift		188682,188799	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.2
MGA_197	LOCUS_01940	sequence1:209296..210612(+)	partial			WP_010922714.1	M protein	73.5	65.7	31.1
MGA_198	LOCUS_01950	sequence1:210987..212339(+)	partial			WP_001043090.1	LPXTG cell wall anchor domain-containing protein	62.4	56.4	36.2
MGA_218	LOCUS_02150	sequence1:240183..240719(-)	partial			WP_000350703.1	cyclic nucleotide-binding domain-containing protein	87.6	73.4	53.5
MGA_235	LOCUS_02320	sequence1:256825..257622(-)	frameshift		257720	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_247	LOCUS_02440	sequence1:264730..264969(-)	frameshift		265040	WP_011837674.1	sigma factor-like helix-turn-helix DNA-binding protein	100.0	53.0	63.3
MGA_248	LOCUS_02450	sequence1:264984..265178(-)	frameshift		265040	WP_011837674.1	sigma factor-like helix-turn-helix DNA-binding protein	76.6	32.9	73.5
MGA_257	LOCUS_02540	sequence1:271575..271727(-)	internal_stop_codon	271749..271751(-)		WP_010922769.1	hypothetical protein	100.0	30.9	80.0
MGA_258	LOCUS_02550	sequence1:271749..272063(-)	internal_stop_codon	271749..271751(-)		WP_010922769.1	hypothetical protein	100.0	64.2	81.7
MGA_267	LOCUS_02640	sequence1:276021..276587(+)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	38.8	51.8	53.4
MGA_292	LOCUS_02880	sequence1:306010..306234(+)	frameshift,internal_stop_codon	306233..306235(+),306005..306007(+)	305968	WP_003234692.1	alpha-amylase	98.6	11.1	57.5
MGA_293	LOCUS_02890	sequence1:306262..306957(+)	internal_stop_codon	306232..306234(+),307087..307089(+),306004..306006(+),306955..306957(+)		WP_003234692.1	alpha-amylase	96.5	37.5	49.0
MGA_294	LOCUS_02900	sequence1:307392..308765(+)	partial			WP_003234692.1	alpha-amylase	87.7	60.8	54.1
MGA_300	LOCUS_02960	sequence1:315629..316078(+)	partial			WP_002469559.1	antiholin-like murein hydrolase modulator LrgA	74.5	74.5	57.7
MGA_301	LOCUS_02970	sequence1:316096..316629(+)	frameshift		316539	WP_001831408.1	antiholin-like protein LrgB	81.4	61.8	59.0
MGA_302	LOCUS_02980	sequence1:316586..316804(+)	frameshift		316539	WP_000607067.1	antiholin-like protein LrgB	98.6	30.5	53.5
MGA_306	LOCUS_03020	sequence1:319473..320075(+)	partial			WP_000564846.1	ISAs1-like element IS1548 family transposase	93.0	49.3	98.4
MGA_312	LOCUS_03080	sequence1:326511..326750(+)	internal_stop_codon	326256..326258(+),326748..326750(+),326415..326417(+)		WP_205010637.1	IS30 family transposase	98.7	24.6	62.8
MGA_313	LOCUS_03090	sequence1:326838..327143(+)	internal_stop_codon	326748..326750(+)		WP_205010637.1	IS30 family transposase	95.0	30.3	74.0
MGA_326	LOCUS_03220	sequence1:342104..342457(+)	internal_stop_codon	342044..342046(+)		WP_077244862.1	IS481 family transposase	84.6	32.2	37.6
MGA_335	LOCUS_03300	sequence1:357182..357604(-)	frameshift,internal_stop_codon	357076..357078(-)	356919	WP_001153836.1	IS30 family transposase	99.3	41.5	64.0
MGA_346	LOCUS_03410	sequence1:365547..365915(+)	frameshift,internal_stop_codon	365913..365915(+),365931..365933(+),365964..365966(+)	365541	WP_012775274.1	pneumococcal-type histidine triad protein	45.9	6.2	50.0
MGA_348	LOCUS_03430	sequence1:366777..367322(+)	internal_stop_codon	366519..366521(+),366612..366614(+),366705..366707(+)		WP_012775196.1	pneumococcal-type histidine triad protein	81.8	17.1	32.9
MGA_350	LOCUS_03450	sequence1:368020..368736(+)	internal_stop_codon	367855..367857(+)		WP_000009961.1	biotin synthase BioB	97.5	70.3	53.0
MGA_439	LOCUS_04340	sequence1:454757..455053(+)	frameshift		454682,455015	WP_100190746.1	IS3 family transposase	84.7	21.7	61.4
MGA_447	LOCUS_04420	sequence1:465149..465550(-)	partial			WP_102777394.1	IS3 family transposase	100.0	35.4	79.7
MGA_448	LOCUS_04430	sequence1:465592..466416(-)	frameshift		466481	WP_096040522.1	IS3 family transposase	97.1	69.6	62.8
MGA_451	LOCUS_04460	sequence1:467426..467692(-)	internal_stop_codon	467864..467866(-)		WP_041828132.1	IS256-like element IS1191 family transposase	100.0	22.5	73.9
MGA_457	LOCUS_04520	sequence1:471449..472966(-)	partial			WP_010714140.1	DNA primase family protein	86.1	53.5	37.1
MGA_466	LOCUS_04610	sequence1:476567..477223(-)	frameshift		477194,477231	WP_010922759.1	Bro-N domain-containing protein	88.5	78.4	65.0
MGA_469	LOCUS_04640	sequence1:477767..478309(+)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	38.9	49.6	71.4
MGA_481	LOCUS_04760	sequence1:486608..487231(+)	partial			WP_209421102.1	IS3 family transposase	94.2	41.9	56.4
MGA_523	LOCUS_05180	sequence1:510024..510932(+)	partial			WP_014207062.1	minor capsid protein	28.8	22.8	36.8
MGA_537	LOCUS_05320	sequence1:519453..522902(+)	partial			WP_000955548.1	glucosaminidase domain-containing protein	83.8	72.0	43.9
MGA_538	LOCUS_05330	sequence1:522907..524763(+)	partial			WP_000536253.1	DUF859 family phage minor structural protein	73.8	68.7	37.2
MGA_544	LOCUS_05390	sequence1:527231..527833(+)	partial			WP_000227060.1	hypothetical protein	53.5	67.7	42.6
MGA_549	LOCUS_05440	sequence1:530957..531652(+)	partial			WP_002988478.1	streptococcal pyrogenic exotoxin SpeC	67.5	67.7	31.9
MGA_561	LOCUS_05560	sequence1:540728..541903(+)	partial			WP_010921965.1	LysM domain-containing protein	36.3	36.5	85.9
MGA_573	LOCUS_05680	sequence1:552264..553043(-)	frameshift		553087	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.7
MGA_574	LOCUS_05690	sequence1:553079..553369(-)	frameshift		553093	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_575	LOCUS_05700	sequence1:553495..554004(+)	partial			WP_010921973.1	hypothetical protein	79.9	40.8	77.8
MGA_585	LOCUS_05800	sequence1:563390..563914(+)	frameshift		563896	WP_010921978.1	multidrug efflux MFS transporter	99.4	43.6	66.5
MGA_586	LOCUS_05810	sequence1:563938..564501(+)	frameshift		563896	WP_010921978.1	multidrug efflux MFS transporter	100.0	47.1	89.3
MGA_587	LOCUS_05820	sequence1:564690..564926(+)	partial			WP_002985700.1	preprotein translocase subunit SecG	74.4	74.4	87.9
MGA_591	LOCUS_05860	sequence1:569396..570580(-)	partial			WP_010922721.1	streptodornase B	61.9	73.8	38.5
MGA_614	LOCUS_06090	sequence1:593444..593809(+)	internal_stop_codon	593807..593809(+)		WP_102777394.1	IS3 family transposase	100.0	31.9	91.7
MGA_624	LOCUS_06190	sequence1:604819..605103(+)	frameshift		605100	WP_001093389.1	S8 family serine peptidase	97.9	6.4	39.6
MGA_625	LOCUS_06200	sequence1:605105..607600(+)	frameshift,internal_stop_codon	607598..607600(+)	605100	WP_001093389.1	S8 family serine peptidase	99.0	52.5	72.2
MGA_626	LOCUS_06210	sequence1:607604..609490(+)	internal_stop_codon	607598..607600(+)		WP_001093389.1	S8 family serine peptidase	97.6	38.6	54.3
MGA_632	LOCUS_06270	sequence1:614895..615050(-)	partial			WP_002985576.1	SPJ_0845 family protein	70.6	70.6	80.6
MGA_635	LOCUS_06300	sequence1:616779..617831(+)	frameshift		616777	WP_000833273.1	ATP-binding protein	98.3	77.7	75.6
MGA_691	LOCUS_06860	sequence1:676135..676371(-)	frameshift,internal_stop_codon	676133..676135(-)	676465,676405	WP_011836763.1	metallophosphoesterase	100.0	27.3	46.2
MGA_692	LOCUS_06870	sequence1:676412..676948(-)	frameshift,internal_stop_codon	676133..676135(-)	676468,676405	WP_000163483.1	metallophosphoesterase	90.4	55.9	53.4
MGA_693	LOCUS_06880	sequence1:677185..678303(+)	partial			WP_002273870.1	type I pullulanase	62.1	28.0	29.1
MGA_694	LOCUS_06890	sequence1:678581..680239(+)	partial			WP_003549917.1	type I pullulanase	84.6	37.8	43.6
MGA_707	LOCUS_07020	sequence1:695123..695536(+)	internal_stop_codon	695063..695065(+)		WP_002263720.1	DUF1003 domain-containing protein	90.5	49.2	69.4
MGA_713	LOCUS_07080	sequence1:701844..702155(+)	frameshift		702134	WP_010922098.1	GntR family transcriptional regulator	94.2	40.4	90.7
MGA_714	LOCUS_07090	sequence1:702166..702567(+)	frameshift		702134	WP_010922098.1	GntR family transcriptional regulator	100.0	55.4	89.5
MGA_719	LOCUS_07140	sequence1:705721..706338(-)	internal_stop_codon	706375..706377(-)		WP_011837122.1	glutathione-dependent disulfide-bond oxidoreductase	99.5	77.9	63.2
MGA_728	LOCUS_07230	sequence1:712793..713152(-)	partial			WP_010905968.1	helix-turn-helix domain-containing protein	73.1	50.3	43.7
MGA_773	LOCUS_07680	sequence1:744225..745598(+)	partial			WP_011014533.1	hypothetical protein	42.0	21.7	30.7
MGA_785	LOCUS_07800	sequence1:753328..753507(+)	partial			WP_000965642.1	hypothetical protein	71.2	71.2	76.2
MGA_794	LOCUS_07890	sequence1:763909..764235(+)	frameshift,internal_stop_codon	764251..764253(+),764233..764235(+)	764277	WP_116878224.1	IS982 family transposase	98.1	40.2	77.4
MGA_797	LOCUS_07920	sequence1:768635..769432(-)	frameshift		769530	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_821	LOCUS_08160	sequence1:795741..796538(-)	frameshift		796636	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_829	LOCUS_08240	sequence1:804233..804556(+)	frameshift,internal_stop_codon	804227..804229(+)	804514	WP_164926142.1	helicase-exonuclease AddAB subunit AddA	86.9	7.6	83.9
MGA_831	LOCUS_08260	sequence1:808021..808719(+)	frameshift		808686	WP_002261967.1	aminotransferase	96.1	60.3	65.4
MGA_832	LOCUS_08270	sequence1:808760..809125(+)	frameshift		808689	WP_002261967.1	aminotransferase	97.5	31.2	54.2
MGA_834	LOCUS_08290	sequence1:810096..810272(+)	partial			WP_000048058.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_868	LOCUS_08630	sequence1:844891..845493(-)	internal_stop_codon	845497..845499(-)		WP_002990257.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	98.5	46.7	84.3
MGA_869	LOCUS_08640	sequence1:845497..846159(-)	internal_stop_codon	845497..845499(-)		WP_002990257.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	100.0	52.1	74.5
MGA_873	LOCUS_08680	sequence1:849524..850159(-)	frameshift		850348,850231	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.2
MGA_874	LOCUS_08690	sequence1:850340..850630(-)	frameshift		850348,850231	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	93.6
MGA_876	LOCUS_08710	sequence1:852415..853281(-)	partial			WP_209421102.1	IS3 family transposase	95.1	59.3	53.5
MGA_878	LOCUS_08730	sequence1:853857..854654(+)	frameshift		853758	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_881	LOCUS_08760	sequence1:855628..856284(+)	frameshift,internal_stop_codon	856283..856285(+)	855592	WP_102777394.1	IS3 family transposase	100.0	57.7	93.1
MGA_883	LOCUS_08780	sequence1:857579..857917(-)	partial			WP_003596308.1	IS30 family transposase	83.0	28.4	52.1
MGA_899	LOCUS_08940	sequence1:873528..873839(+)	frameshift,internal_stop_codon	873822..873824(+)	873773	WP_002287776.1	VTT domain-containing protein	77.7	39.9	41.2
MGA_900	LOCUS_08950	sequence1:874093..874980(+)	frameshift		874953	WP_010922150.1	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	97.6	49.9	64.9
MGA_901	LOCUS_08960	sequence1:875019..875834(+)	frameshift		874956	WP_010922150.1	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	100.0	47.0	78.2
MGA_904	LOCUS_08990	sequence1:876969..877256(+)	frameshift,internal_stop_codon	877466..877468(+),877467..877469(+)	877250	WP_001043090.1	LPXTG cell wall anchor domain-containing protein	98.9	18.4	50.0
MGA_905	LOCUS_09000	sequence1:877253..877468(+)	frameshift,internal_stop_codon	877718..877720(+),877466..877468(+),877719..877721(+),877467..877469(+)	877253	WP_001043090.1	LPXTG cell wall anchor domain-containing protein	59.2	8.2	59.5
MGA_944	LOCUS_09390	sequence1:919377..920174(-)	internal_stop_codon	920262..920264(-)		WP_205010637.1	IS30 family transposase	98.1	82.0	67.7
MGA_952	LOCUS_09470	sequence1:925592..926002(+)	partial			WP_000821307.1	CPBP family intramembrane metalloprotease	99.3	69.2	41.5
MGA_970	LOCUS_09650	sequence1:952346..953155(+)	partial			WP_001071181.1	SNF2-related protein	99.6	11.8	82.8
MGA_981	LOCUS_09760	sequence1:958829..961912(+)	partial			WP_011023138.1	ATP-dependent DNA helicase	42.5	55.5	24.0
MGA_985	LOCUS_09800	sequence1:965079..965300(+)	internal_stop_codon	965298..965300(+)		WP_011475538.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	94.5	18.4	62.3
MGA_986	LOCUS_09810	sequence1:965382..965939(+)	frameshift,internal_stop_codon	965298..965300(+)	965927	WP_005812397.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	98.9	47.5	52.5
MGA_987	LOCUS_09820	sequence1:965917..966198(+)	frameshift		965927	WP_005812397.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	92.5	22.7	61.6
MGA_988	LOCUS_09830	sequence1:966351..966641(-)	frameshift		966766	WP_000057440.1	IS200/IS605 family transposase	100.0	62.3	97.9
MGA_993	LOCUS_09880	sequence1:970810..970956(-)	partial			WP_003812004.1	P-II family nitrogen regulator	100.0	42.9	56.2
MGA_1021	LOCUS_10160	sequence1:995944..996354(-)	frameshift,internal_stop_codon	995944..995946(-),996355..996357(-),995926..995928(-),996625..996627(-)	995901	WP_116878224.1	IS982 family transposase	98.5	50.8	76.1
MGA_1022	LOCUS_10170	sequence1:996782..997291(+)	frameshift,internal_stop_codon	997289..997291(+)	997552,997546	WP_010922289.1	NADP-dependent malic enzyme	71.6	34.3	81.2
MGA_1023	LOCUS_10180	sequence1:997319..997561(+)	frameshift,internal_stop_codon	997289..997291(+)	997552,997546	WP_010922289.1	NADP-dependent malic enzyme	93.8	19.1	89.3
MGA_1024	LOCUS_10190	sequence1:997641..997784(+)	frameshift		997546,997558	WP_010922289.1	NADP-dependent malic enzyme	100.0	12.1	68.1
MGA_1026	LOCUS_10210	sequence1:999542..1000240(-)	internal_stop_codon	1000352..1000354(-)		WP_001086430.1	AraC family transcriptional regulator	98.3	73.8	67.1
MGA_1067	LOCUS_10620	sequence1:1039324..1039782(+)	partial			WP_000672596.1	pneumococcal histidine triad protein PhtE	94.1	13.4	44.4
MGA_1069	LOCUS_10640	sequence1:1041370..1041585(+)	frameshift		1041576	WP_000755138.1	metal ABC transporter substrate-binding lipoprotein/laminin-binding adhesin Lmb	84.5	19.6	75.0
MGA_1070	LOCUS_10650	sequence1:1041551..1041985(+)	frameshift,internal_stop_codon	1041983..1041985(+)	1041576	WP_002987954.1	metal ABC transporter substrate-binding lipoprotein/laminin-binding adhesin Lmb	95.8	45.4	56.8
MGA_1071	LOCUS_10660	sequence1:1042231..1042521(+)	frameshift		1042512	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	92.6
MGA_1072	LOCUS_10670	sequence1:1042557..1043336(+)	frameshift		1042512	WP_088197863.1	IS3-like element ISSag2 family transposase	99.2	69.8	94.2
MGA_1076	LOCUS_10710	sequence1:1045499..1046086(+)	frameshift		1045424,1046060	WP_100190746.1	IS3 family transposase	93.8	47.9	61.7
MGA_1077	LOCUS_10720	sequence1:1046109..1046324(+)	frameshift		1046062	WP_143249001.1	IS3 family transposase	95.8	49.6	80.9
MGA_1085	LOCUS_10800	sequence1:1054514..1055284(+)	partial			WP_001305829.1	ferredoxin reductase family protein	83.6	49.4	25.0
MGA_1092	LOCUS_10870	sequence1:1061231..1061653(+)	partial			WP_004398494.1	cupin domain-containing protein	91.4	68.8	60.2
MGA_1102	LOCUS_10970	sequence1:1071619..1072203(-)	frameshift		1072282	WP_000620981.1	sensor histidine kinase	97.4	60.6	56.1
MGA_1129	LOCUS_11240	sequence1:1097248..1097628(-)	frameshift		1097262	WP_010922317.1	D-lactate dehydrogenase	41.3	15.8	92.3
MGA_1130	LOCUS_11250	sequence1:1097661..1097873(-)	frameshift		1097919	WP_143249001.1	IS3 family transposase	94.3	48.2	84.8
MGA_1131	LOCUS_11260	sequence1:1097896..1098483(-)	frameshift		1097921,1098557	WP_100190746.1	IS3 family transposase	94.9	48.4	63.8
MGA_1145	LOCUS_11400	sequence1:1109615..1109854(-)	frameshift,internal_stop_codon	1109951..1109953(-),1109569..1109571(-),1109858..1109860(-)	1109385,1109623,1110047	WP_010922339.1	pyridoxamine kinase	97.5	26.7	55.8
MGA_1146	LOCUS_11410	sequence1:1109943..1110149(-)	frameshift,internal_stop_codon	1109951..1109953(-),1109858..1109860(-)	1110047	WP_010922339.1	pyridoxamine kinase	50.0	11.8	73.5
MGA_1151	LOCUS_11460	sequence1:1115387..1115677(+)	frameshift		1115668	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1152	LOCUS_11470	sequence1:1115713..1116492(+)	frameshift		1115668	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.3
MGA_1153	LOCUS_11480	sequence1:1116501..1117292(-)	frameshift		1117390	WP_120719018.1	IS3 family transposase	95.8	56.1	71.4
MGA_1195	LOCUS_11900	sequence1:1160404..1161186(-)	frameshift		1161302	WP_010922365.1	FtsX-like permease family protein	100.0	29.4	64.2
MGA_1196	LOCUS_11910	sequence1:1161270..1163048(-)	frameshift		1161302	WP_010922365.1	FtsX-like permease family protein	98.1	66.2	69.7
MGA_1201	LOCUS_11960	sequence1:1165859..1166056(-)	partial			WP_002984476.1	CsbD family protein	70.8	69.7	89.1
MGA_1209	LOCUS_12040	sequence1:1173743..1174567(-)	frameshift		1174632	WP_096040522.1	IS3 family transposase	97.1	69.6	63.5
MGA_1211	LOCUS_12060	sequence1:1175260..1175388(-)	internal_stop_codon	1175260..1175262(-)		WP_205008888.1	hypothetical protein	100.0	43.8	85.7
MGA_1238	LOCUS_12330	sequence1:1206207..1207004(-)	frameshift		1207102	WP_120719018.1	IS3 family transposase	99.2	58.6	71.9
MGA_1255	LOCUS_12500	sequence1:1222658..1222813(+)	frameshift,internal_stop_codon	1222649..1222651(+)	1222783	WP_003566048.1	pyruvate oxidase	80.4	7.0	61.0
MGA_1258	LOCUS_12530	sequence1:1224870..1225148(-)	frameshift		1225225	WP_010989455.1	Cof-type HAD-IIB family hydrolase	94.6	32.2	55.2
MGA_1260	LOCUS_12550	sequence1:1225487..1225669(-)	internal_stop_codon	1225487..1225489(-)		WP_011100993.1	Cof-type HAD-IIB family hydrolase	96.7	22.1	55.2
MGA_1264	LOCUS_12590	sequence1:1228438..1228692(+)	frameshift,internal_stop_codon	1228690..1228692(+)	1228872	WP_011462034.1	permease	96.4	24.6	56.1
MGA_1265	LOCUS_12600	sequence1:1228856..1229434(+)	frameshift,internal_stop_codon	1228690..1228692(+)	1228872	WP_011462034.1	permease	98.4	56.6	49.7
MGA_1266	LOCUS_12610	sequence1:1229444..1229701(+)	partial			WP_041272757.1	thioredoxin family protein	85.9	62.4	54.8
MGA_1267	LOCUS_12620	sequence1:1230399..1230557(-)	frameshift,internal_stop_codon	1230399..1230401(-)	1230221	WP_010922263.1	sugar O-acetyltransferase	98.1	27.1	80.4
MGA_1328	LOCUS_13230	sequence1:1293201..1297484(-)	partial			WP_196792563.1	LPXTG cell wall anchor domain-containing protein	29.2	49.9	63.8
MGA_1331	LOCUS_13260	sequence1:1298918..1301263(-)	partial			WP_001247520.1	GBS Bsp-like repeat-containing protein	22.0	19.9	49.1
MGA_1332	LOCUS_13270	sequence1:1301301..1301627(-)	partial			WP_010905962.1	single-stranded DNA-binding protein	95.4	73.8	52.9
MGA_1333	LOCUS_13280	sequence1:1301639..1302610(-)	partial			WP_105158881.1	replication initiator protein A	64.7	70.6	31.8
MGA_1346	LOCUS_13410	sequence1:1313404..1313631(-)	internal_stop_codon	1313638..1313640(-)		WP_012775202.1	ZIP family metal transporter	100.0	27.4	74.7
MGA_1347	LOCUS_13420	sequence1:1313638..1314225(-)	internal_stop_codon	1313638..1313640(-)		WP_002904720.1	ZIP family manganese transporter TmpA	100.0	71.5	70.1
MGA_1376	LOCUS_13710	sequence1:1343076..1344308(-)	internal_stop_codon	1344390..1344392(-)		WP_010922389.1	glycoside hydrolase family 13 protein	100.0	72.3	91.5
MGA_1377	LOCUS_13720	sequence1:1344390..1344779(-)	internal_stop_codon	1344390..1344392(-)		WP_010922389.1	glycoside hydrolase family 13 protein	100.0	22.8	96.1
MGA_1378	LOCUS_13730	sequence1:1344847..1345644(-)	frameshift		1345742	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1389	LOCUS_13840	sequence1:1358317..1358487(+)	frameshift,internal_stop_codon	1358485..1358487(+)	1358598	WP_165992825.1	IS3 family transposase	73.2	10.8	100.0
MGA_1390	LOCUS_13850	sequence1:1358748..1359365(+)	frameshift,internal_stop_codon	1358485..1358487(+)	1358595	WP_088197835.1	IS3-like element ISSag5 family transposase	97.6	52.5	92.5
MGA_1391	LOCUS_13860	sequence1:1359565..1359942(-)	partial			WP_076996129.1	IS1182 family transposase	62.4	16.2	76.9
MGA_1395	LOCUS_13900	sequence1:1363311..1364228(+)	partial			WP_002682345.1	CorA family divalent cation transporter	60.7	60.3	37.0
MGA_1404	LOCUS_13990	sequence1:1371902..1372471(-)	partial			WP_088197863.1	IS3-like element ISSag2 family transposase	60.3	31.2	80.9
MGA_1410	LOCUS_14050	sequence1:1378691..1379488(+)	frameshift		1378592	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1459	LOCUS_14540	sequence1:1436849..1437670(-)	frameshift,internal_stop_codon	1437928..1437930(-)	1437744	WP_100190746.1	IS3 family transposase	97.4	69.6	62.4
MGA_1460	LOCUS_14550	sequence1:1437703..1437918(-)	internal_stop_codon	1437928..1437930(-)		WP_027970603.1	transposase	100.0	73.2	63.4
MGA_1467	LOCUS_14620	sequence1:1444129..1444521(-)	internal_stop_codon	1444129..1444131(-)		WP_010922432.1	hypothetical protein	44.6	70.7	75.9
MGA_1475	LOCUS_14700	sequence1:1451720..1451881(-)	internal_stop_codon	1451906..1451908(-)		WP_010922439.1	potassium transporter Kup	100.0	8.0	100.0
MGA_1480	LOCUS_14750	sequence1:1457205..1457798(-)	frameshift		1457806	WP_000582850.1	ATP-binding cassette domain-containing protein	100.0	80.7	75.6
MGA_1481	LOCUS_14760	sequence1:1457801..1457938(-)	frameshift		1457806	WP_000582850.1	ATP-binding cassette domain-containing protein	97.8	18.0	84.1
MGA_1514	LOCUS_15090	sequence1:1492818..1493150(-)	frameshift		1492823	WP_002263564.1	ferrous iron transport protein A	97.3	67.7	52.3
MGA_1532	LOCUS_15270	sequence1:1512040..1513686(-)	partial			WP_012027720.1	transglutaminase domain-containing protein	59.5	31.2	29.6
MGA_1536	LOCUS_15310	sequence1:1516693..1517208(-)	frameshift		1517228	WP_009880399.1	ROK family glucokinase	100.0	52.9	95.3
MGA_1537	LOCUS_15320	sequence1:1517205..1517663(-)	frameshift		1517225	WP_009880399.1	ROK family glucokinase	96.7	45.5	94.6
MGA_1545	LOCUS_15400	sequence1:1526800..1527207(-)	frameshift		1527227	WP_002261950.1	SDR family oxidoreductase	94.8	46.2	55.5
MGA_1546	LOCUS_15410	sequence1:1527222..1527641(-)	frameshift		1527227	WP_002261950.1	SDR family oxidoreductase	95.7	48.0	57.9
MGA_1561	LOCUS_15560	sequence1:1542643..1542957(-)	frameshift		1542687	WP_026217689.1	GNAT family N-acetyltransferase	85.6	62.2	70.8
MGA_1576	LOCUS_15710	sequence1:1556723..1557091(-)	internal_stop_codon	1557092..1557094(-)		WP_003060901.1	CRISPR-associated protein Cas4	97.5	53.1	78.2
MGA_1577	LOCUS_15720	sequence1:1557092..1557394(-)	internal_stop_codon	1557092..1557094(-)		WP_003060901.1	CRISPR-associated protein Cas4	100.0	44.6	95.0
MGA_1581	LOCUS_15760	sequence1:1561003..1561845(-)	partial			WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	99.3	34.7	93.2
MGA_1583	LOCUS_15780	sequence1:1562505..1563302(+)	frameshift		1562406	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1584	LOCUS_15790	sequence1:1563250..1564866(-)	partial			WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	94.2	62.7	94.1
MGA_1594	LOCUS_15890	sequence1:1573566..1573766(-)	internal_stop_codon	1573566..1573568(-)		WP_205010637.1	IS30 family transposase	90.9	19.2	55.7
MGA_1615	LOCUS_16100	sequence1:1592483..1596538(-)	partial			WP_196792563.1	LPXTG cell wall anchor domain-containing protein	27.8	44.4	68.9
MGA_1616	LOCUS_16110	sequence1:1596708..1598990(-)	partial			WP_001247520.1	GBS Bsp-like repeat-containing protein	22.6	19.9	49.1
MGA_1618	LOCUS_16130	sequence1:1599433..1599723(+)	frameshift		1599708	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1619	LOCUS_16140	sequence1:1599759..1600538(+)	frameshift		1599714	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.7
MGA_1623	LOCUS_16180	sequence1:1602046..1602825(-)	frameshift		1602869	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.3
MGA_1624	LOCUS_16190	sequence1:1602861..1603151(-)	frameshift		1602875	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1634	LOCUS_16290	sequence1:1611798..1612082(-)	partial			WP_010906104.1	histidine phosphatase family protein	89.4	44.4	56.0
MGA_1655	LOCUS_16500	sequence1:1637465..1637959(-)	internal_stop_codon	1638056..1638058(-)		WP_023610113.1	glycoside hydrolase family 2 protein	99.4	14.1	46.6
MGA_1657	LOCUS_16520	sequence1:1638329..1640875(-)	internal_stop_codon	1638056..1638058(-),1638329..1638331(-)		WP_023610113.1	glycoside hydrolase family 2 protein	100.0	74.7	74.4
MGA_1658	LOCUS_16530	sequence1:1640895..1641554(-)	partial			WP_010922520.1	response regulator transcription factor	100.0	44.3	87.7
MGA_1659	LOCUS_16540	sequence1:1641594..1642148(+)	internal_stop_codon	1642146..1642148(+)		WP_002285980.1	GH92 family glycosyl hydrolase	50.5	13.0	52.7
MGA_1660	LOCUS_16550	sequence1:1642441..1643133(-)	partial			WP_010922531.1	transcriptional regulator RocA	95.2	49.9	38.7
MGA_1661	LOCUS_16560	sequence1:1643519..1644628(-)	partial			WP_010922527.1	glycoside hydrolase family 1 protein	85.6	72.5	86.8
MGA_1662	LOCUS_16570	sequence1:1644709..1645449(-)	frameshift,internal_stop_codon	1644712..1644714(-)	1644726	WP_002983707.1	GntR family transcriptional regulator	99.2	70.2	86.9
MGA_1663	LOCUS_16580	sequence1:1645482..1645661(+)	frameshift,internal_stop_codon	1645659..1645661(+),1645806..1645808(+)	1645802	WP_038431480.1	glycoside hydrolase family 125 protein	100.0	13.8	94.9
MGA_1664	LOCUS_16590	sequence1:1645686..1645835(+)	frameshift,internal_stop_codon	1645659..1645661(+),1645806..1645808(+)	1645802	WP_038431480.1	glycoside hydrolase family 125 protein	83.7	9.6	92.7
MGA_1665	LOCUS_16600	sequence1:1645900..1647333(+)	frameshift		1647318	WP_010922530.1	alpha-mannosidase	75.1	39.7	87.4
MGA_1666	LOCUS_16610	sequence1:1647330..1647872(+)	frameshift		1647318	WP_010922530.1	alpha-mannosidase	99.4	19.9	79.3
MGA_1667	LOCUS_16620	sequence1:1647982..1648257(-)	frameshift,internal_stop_codon	1648254..1648256(-)	1648250	WP_002897353.1	GNAT family N-acetyltransferase	74.7	24.1	47.8
MGA_1670	LOCUS_16650	sequence1:1651295..1651717(+)	frameshift,internal_stop_codon	1651208..1651210(+),1651202..1651204(+)	1651168,1651979,1651276	WP_001153836.1	IS30 family transposase	99.3	41.5	61.9
MGA_1671	LOCUS_16660	sequence1:1652214..1652513(-)	frameshift,internal_stop_codon	1652734..1652736(-),1652562..1652564(-)	1652619	WP_000154537.1	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	83.8	11.0	33.7
MGA_1677	LOCUS_16710	sequence1:1662554..1662835(-)	partial			WP_000766394.1	Cof-type HAD-IIB family hydrolase	88.2	29.0	42.7
MGA_1683	LOCUS_16770	sequence1:1669159..1669449(+)	frameshift		1669440	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1684	LOCUS_16780	sequence1:1669485..1670264(+)	frameshift		1669440	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	93.8
MGA_1686	LOCUS_16800	sequence1:1670855..1671133(-)	internal_stop_codon	1671155..1671157(-)		WP_000859641.1	ATP-binding cassette domain-containing protein	80.4	24.5	54.1
MGA_1687	LOCUS_16810	sequence1:1671155..1671550(-)	internal_stop_codon	1671155..1671157(-)		WP_011986470.1	ABC transporter ATP-binding protein	99.2	56.7	36.4
MGA_1690	LOCUS_16840	sequence1:1672808..1673065(+)	frameshift		1673041,1672818,1673171	WP_001153836.1	IS30 family transposase	88.2	22.4	68.0
MGA_1692	LOCUS_16860	sequence1:1673833..1674213(-)	partial			WP_002983685.1	ComF family protein	100.0	57.0	61.1
MGA_1693	LOCUS_16870	sequence1:1674470..1675444(-)	partial			WP_010922534.1	DEAD/DEAH box helicase	99.7	73.2	71.5
MGA_1706	LOCUS_17000	sequence1:1689359..1689676(-)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	68.6	68.6	94.4
MGA_1763	LOCUS_17570	sequence1:1752275..1753072(-)	frameshift		1753037	WP_010922663.1	tagatose-6-phosphate kinase	93.2	79.6	59.9
MGA_1764	LOCUS_17580	sequence1:1752996..1753229(-)	frameshift		1753040	WP_000604263.1	tagatose-6-phosphate kinase	83.1	20.7	76.6
MGA_1781	LOCUS_17750	sequence1:1768202..1768837(-)	frameshift		1769025	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	96.7
MGA_1782	LOCUS_17760	sequence1:1769017..1769307(-)	frameshift		1769025	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1798	LOCUS_17920	sequence1:1782595..1783368(-)	frameshift		1783379	WP_000480862.1	acyltransferase family protein	99.2	77.3	63.1
MGA_1799	LOCUS_17930	sequence1:1783365..1783661(-)	frameshift		1783379	WP_000480862.1	acyltransferase family protein	72.4	21.5	85.9
MGA_1858	LOCUS_18520	sequence1:1848633..1848971(-)	partial			WP_010922622.1	ROK family protein	81.2	31.0	83.5
MGA_1867	LOCUS_18610	sequence1:1857290..1858039(+)	partial			WP_011014004.1	excalibur calcium-binding domain-containing protein	20.1	41.8	54.2
MGA_1876	LOCUS_18700	sequence1:1866113..1866274(-)	partial			WP_002983113.1	hypothetical protein	100.0	54.6	75.5
MGA_1879	LOCUS_18730	sequence1:1867787..1868584(-)	frameshift		1868682	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1893	LOCUS_18870	sequence1:1883743..1884033(-)	frameshift		1884001	WP_002325884.1	IS30 family transposase	85.4	25.9	64.6
MGA_1894	LOCUS_18880	sequence1:1883978..1884403(-)	frameshift,internal_stop_codon	1884473..1884475(-)	1884001	WP_002389992.1	IS30-like element IS6770 family transposase	89.4	39.5	63.5
MGA_1895	LOCUS_18890	sequence1:1884473..1884676(-)	internal_stop_codon	1884473..1884475(-)		WP_002287225.1	IS30 family transposase	100.0	21.0	67.2
MGA_1899	LOCUS_18930	sequence1:1887383..1888180(+)	frameshift		1887284	WP_120719018.1	IS3 family transposase	99.2	58.6	71.9
MGA_1903	LOCUS_18970	sequence1:1892682..1892921(+)	frameshift,internal_stop_codon	1893090..1893092(+),1892919..1892921(+)	1892951	WP_102777394.1	IS3 family transposase	100.0	21.0	94.9
MGA_1904	LOCUS_18980	sequence1:1893278..1893814(+)	internal_stop_codon	1893242..1893244(+),1893089..1893091(+)		WP_102777394.1	IS3 family transposase	100.0	47.1	86.0
MGA_1934	LOCUS_19280	sequence1:1918722..1919519(+)	frameshift		1918623	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1951	LOCUS_19450	sequence1:1936433..1936852(-)	internal_stop_codon	1936877..1936879(-),1937045..1937047(-)		WP_011674828.1	MDR family MFS transporter	74.8	21.4	48.1
MGA_1952	LOCUS_19460	sequence1:1937217..1937702(-)	frameshift,internal_stop_codon	1937043..1937045(-)	1937156,1937222	WP_002385351.1	MDR family MFS transporter	99.4	32.5	47.6
MGA_1953	LOCUS_19470	sequence1:1937951..1938289(+)	frameshift		1938278,1938023	WP_001557561.1	isochorismatase family protein	79.5	47.6	48.3
MGA_2033	LOCUS_20270	sequence1:2023670..2023948(+)	partial			WP_003595964.1	GNAT family N-acetyltransferase	75.0	74.0	43.7
MGA_2037	LOCUS_20310	sequence1:2027538..2028251(+)	internal_stop_codon	2028249..2028251(+)		WP_184006649.1	IS1182 family transposase	100.0	49.4	77.2
MGA_2038	LOCUS_20320	sequence1:2028450..2028836(+)	internal_stop_codon	2028249..2028251(+),2028834..2028836(+)		WP_184006649.1	IS1182 family transposase	100.0	26.7	75.0
MGA_2082	LOCUS_20760	sequence1:2078007..2078225(-)	frameshift,internal_stop_codon	2078004..2078006(-),2077910..2077912(-),2078007..2078009(-)	2077810,2077979,2077794	WP_054278179.1	site-specific integrase	88.9	16.8	48.4
MGA_2115	LOCUS_21090	sequence1:2115942..2116235(+)	internal_stop_codon	2116233..2116235(+)		WP_011837716.1	HAD family hydrolase	100.0	44.7	42.3
MGA_2116	LOCUS_21100	sequence1:2116504..2117031(-)	partial			WP_001042655.1	transglycosylase SLT domain-containing protein	54.9	41.0	77.1
MGA_2128	LOCUS_21220	sequence1:2128533..2129048(-)	frameshift		2129053	WP_102777394.1	IS3 family transposase	100.0	45.5	78.9
MGA_2129	LOCUS_21230	sequence1:2129045..2129356(-)	frameshift		2129053	WP_102777394.1	IS3 family transposase	98.1	27.7	66.3
MGA_2131	LOCUS_21250	sequence1:2129885..2130709(+)	frameshift		2129819	WP_096040522.1	IS3 family transposase	97.1	69.6	64.7
MGA_2146	LOCUS_21390	sequence3:1103..1345(+)	partial			WP_002263544.1	type II toxin-antitoxin system HicB family antitoxin	95.0	60.8	53.9
MGA_2149	LOCUS_21420	sequence3:4453..4695(+)	partial			WP_002263544.1	type II toxin-antitoxin system HicB family antitoxin	95.0	60.8	53.9
