{ "type": "genome", "identifier": "GCF_900459225.1", "organism": "Streptococcus dysgalactiae subsp. dysgalactiae", "title": "Streptococcus dysgalactiae subsp. dysgalactiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900459225.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4030746", "wgs_master": "UHFH00000000.1", "refseq_category": "na", "taxid": "99822", "species_taxid": "1334", "organism_name": "Streptococcus dysgalactiae subsp. dysgalactiae", "infraspecific_name": "strain=NCTC13731", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "48128_B02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900459225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/459/225/GCF_900459225.1_48128_B02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2151704", "genome_size_ungapped": "2151704", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900459225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2162", "protein_coding_gene_count": "1951", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus dysgalactiae subsp. dysgalactiae" ], "sample_taxid": [ "99822" ], "sample_host_organism": [ "Cow" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.605 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2151704", "Number of Sequences": "3", "Longest Sequences (bp)": "2141282", "N50 (bp)": "2141282", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.3", "Number of CDSs": "2141", "Average Protein Length": "287.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "18", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus dysgalactiae subsp. dysgalactiae", "strain": "strain=NCTC13731", "accession": "GCA_900459225.1", "taxid": 99822, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 714, "total_fragments": 716, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 99.9926, "matched_fragments": 712, "total_fragments": 716, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=PartK-Spyogenes-RM8376", "accession": "GCA_022869605.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 87.4115, "matched_fragments": 454, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=NCTC8198", "accession": "GCA_002055535.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 87.244, "matched_fragments": 454, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_004028355.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 87.2363, "matched_fragments": 452, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=DSM 20565", "accession": "GCA_000421785.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 87.2272, "matched_fragments": 441, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 85.271, "matched_fragments": 501, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, "relation_to_type": "type", "validated": true, "ani": 80.7148, "matched_fragments": 191, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 79.6658, "matched_fragments": 180, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 79.1139, "matched_fragments": 125, "total_fragments": 716, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900459225.1", "gtdb_species": "s__Streptococcus dysgalactiae", "ani": 100.0, "matched_fragments": 713, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 121, "status": "conclusive" }, { "accession": "GCF_002055535.1", "gtdb_species": "s__Streptococcus pyogenes", "ani": 87.251, "matched_fragments": 452, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 2144, "status": "-" }, { "accession": "GCF_900636575.1", "gtdb_species": "s__Streptococcus canis", "ani": 85.2775, "matched_fragments": 500, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000425025.1", "gtdb_species": "s__Streptococcus castoreus", "ani": 81.154, "matched_fragments": 347, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000188015.2", 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80.2177, "matched_fragments": 141, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.1304, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_011421455.1", "gtdb_species": "s__Streptococcus catagoni", "ani": 79.6603, "matched_fragments": 182, "total_fragments": 716, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003674745.1", "gtdb_species": "s__Streptococcus iniae", "ani": 79.3184, "matched_fragments": 193, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 36.284, "optimum_ph": 6.89, "genome_size": 2133578.0, "gc_content": 39.521, "coding_genes": 2022.688, "rRNA16S_genes": 5.0, "tRNA_genes": 61.364, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "dysgalactiae", "subsp.", "dysgalactiae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }