{
    "type": "genome",
    "identifier": "GCF_900459315.1",
    "organism": "Faecalicoccus pleomorphus",
    "title": "Faecalicoccus pleomorphus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900459315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4076717",
        "wgs_master": "UHFX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1323",
        "species_taxid": "1323",
        "organism_name": "Faecalicoccus pleomorphus",
        "infraspecific_name": "strain=NCTC11087",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/01",
        "asm_name": "49642_A01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900459315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/459/315/GCF_900459315.1_49642_A01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2055154",
        "genome_size_ungapped": "2055154",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900459315.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2085",
        "protein_coding_gene_count": "2013",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-01",
    "dateModified": "2018-08-01",
    "datePublished": "2018-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Faecalicoccus pleomorphus"
        ],
        "sample_taxid": [
            "1323"
        ],
        "sample_host_organism": [
            "Bird (chicken)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "0.576 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2055154",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2034785",
        "N50 (bp)": "2034785",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "2026",
        "Average Protein Length": "303.8",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "9",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Faecalicoccus pleomorphus",
                "strain": "strain=NCTC11087",
                "accession": "GCA_900459315.1",
                "taxid": 1323,
                "species_taxid": 1323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 682,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalicoccus pleomorphus",
                "strain": "strain=DSM 20574",
                "accession": "GCA_000420345.1",
                "taxid": 1323,
                "species_taxid": 1323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8994,
                "matched_fragments": 640,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalicoccus acidiformans",
                "strain": "strain=DSM 26963",
                "accession": "GCA_014202635.1",
                "taxid": 915173,
                "species_taxid": 915173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5921,
                "matched_fragments": 207,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Floccifex porci",
                "strain": "strain=LKV-178-WT-2G",
                "accession": "GCA_009696175.1",
                "taxid": 2606629,
                "species_taxid": 2606629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7303,
                "matched_fragments": 70,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Holdemanella biformis",
                "strain": "strain=DSM 3989",
                "accession": "GCA_000156655.1",
                "taxid": 1735,
                "species_taxid": 1735,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.618,
                "matched_fragments": 87,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Holdemanella porci",
                "strain": "strain=LKV-472-APC-3",
                "accession": "GCA_009696075.1",
                "taxid": 2652276,
                "species_taxid": 2652276,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3125,
                "matched_fragments": 83,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_024622185.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0419,
                "matched_fragments": 55,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_004341945.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0383,
                "matched_fragments": 55,
                "total_fragments": 683,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000420345.1",
                "gtdb_species": "s__Faecalicoccus pleomorphus",
                "ani": 99.8773,
                "matched_fragments": 641,
                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus",
                "ani_circumscription_radius": 95.0413,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.03",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902399855.1",
                "gtdb_species": "s__Faecalicoccus sp900546545",
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                "matched_fragments": 546,
                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus",
                "ani_circumscription_radius": 95.0413,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_014202635.1",
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                "ani": 79.5921,
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                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "97.66",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003725415.1",
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                "matched_fragments": 78,
                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Absicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.14",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_000156655.1",
                "gtdb_species": "s__Holdemanella biformis",
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                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
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                "status": "-"
            },
            {
                "accession": "GCF_003436425.1",
                "gtdb_species": "s__Holdemanella sp003436425",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
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            },
            {
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            },
            {
                "accession": "GCA_900754615.1",
                "gtdb_species": "s__Holdemanella sp900754615",
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                "total_fragments": 683,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_004341945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Longicatena",
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            },
            {
                "accession": "GCA_900547815.1",
                "gtdb_species": "s__Holdemanella sp900547815",
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                "matched_fragments": 74,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
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                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1992636.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Faecalicoccus",
        "pleomorphus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}