{ "type": "genome", "identifier": "GCF_900459365.1", "organism": "Streptococcus massiliensis", "title": "Streptococcus massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900459365.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3905381", "wgs_master": "UHFR00000000.1", "refseq_category": "reference genome", "taxid": "313439", "species_taxid": "313439", "organism_name": "Streptococcus massiliensis", "infraspecific_name": "strain=NCTC13765", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "45296_H02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900459365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/459/365/GCF_900459365.1_45296_H02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2033868", "genome_size_ungapped": "2033868", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900459365.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2054", "protein_coding_gene_count": "1887", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus massiliensis" ], "sample_taxid": [ "313439" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.571 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2033868", "Number of Sequences": "5", "Longest Sequences (bp)": "1973330", "N50 (bp)": "1973330", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "1953", "Average Protein Length": "305.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "21", "Number of tRNAs": "71", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus massiliensis", "strain": "strain=NCTC13765", "accession": "GCA_900459365.1", "taxid": 313439, "species_taxid": 313439, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 672, "total_fragments": 676, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus massiliensis", "strain": "strain=4401825", "accession": "GCA_000341525.1", "taxid": 313439, "species_taxid": 313439, "relation_to_type": "type", "validated": true, "ani": 99.9113, "matched_fragments": 557, "total_fragments": 676, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus massiliensis", "strain": "strain=DSM 18628", "accession": "GCA_000380065.1", "taxid": 313439, "species_taxid": 313439, "relation_to_type": "type", "validated": true, "ani": 99.8987, "matched_fragments": 569, "total_fragments": 676, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=PartK-Spyogenes-RM8376", "accession": "GCA_022869605.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 81.1003, "matched_fragments": 64, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 80.9455, "matched_fragments": 164, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 80.3909, "matched_fragments": 84, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 80.051, "matched_fragments": 170, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 79.8276, "matched_fragments": 135, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 79.7752, "matched_fragments": 182, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=FDAARGOS 1454", "accession": "GCA_019046945.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6832, "matched_fragments": 174, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", "accession": "GCA_000767835.1", "taxid": 176090, "species_taxid": 176090, "relation_to_type": "type", "validated": true, "ani": 79.6027, "matched_fragments": 166, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5052, "matched_fragments": 129, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 79.416, "matched_fragments": 132, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0398, "matched_fragments": 162, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=ATCC BAA-960", "accession": "GCA_000257825.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 78.9368, "matched_fragments": 106, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=CCUG 49455", "accession": "GCA_002087075.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 78.9282, "matched_fragments": 120, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.7101, "matched_fragments": 110, "total_fragments": 676, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000380065.1", "gtdb_species": "s__Streptococcus massiliensis", "ani": 99.8987, "matched_fragments": 569, "total_fragments": 676, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_017883985.1", "gtdb_species": "s__Streptococcus oricebi", "ani": 80.3212, "matched_fragments": 228, "total_fragments": 676, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.364, "cell_length": -0.364, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 1855069.667, "gc_content": 41.5, "coding_genes": 1944.968, "rRNA16S_genes": 4.791, "tRNA_genes": 62.087, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }