{ "type": "genome", "identifier": "GCF_900459405.1", "organism": "Streptococcus hyointestinalis", "title": "Streptococcus hyointestinalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900459405.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3594353", "wgs_master": "UHFN00000000.1", "refseq_category": "reference genome", "taxid": "1337", "species_taxid": "1337", "organism_name": "Streptococcus hyointestinalis", "infraspecific_name": "strain=NCTC12224", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "41965_B01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900459405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/459/405/GCF_900459405.1_41965_B01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2553358", "genome_size_ungapped": "2553358", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900459405.1-RS_2024_03_12", "annotation_date": "2024-03-12", "total_gene_count": "2595", "protein_coding_gene_count": "2388", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus hyointestinalis" ], "sample_taxid": [ "1337" ], "sample_host_organism": [ "Pig" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2553358", "Number of Sequences": "7", "Longest Sequences (bp)": "2290572", "N50 (bp)": "2290572", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "2525", "Average Protein Length": "292.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "18", "Number of tRNAs": "68", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus hyointestinalis", "strain": "strain=NCTC12224", "accession": "GCA_900459405.1", "taxid": 1337, "species_taxid": 1337, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 846, "total_fragments": 848, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1201, "matched_fragments": 85, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=PartK-Spyogenes-RM8376", "accession": "GCA_022869605.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 81.3416, "matched_fragments": 86, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_004028355.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 81.325, "matched_fragments": 85, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 80.7555, "matched_fragments": 102, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porci", "strain": "strain=DSM 23759", "accession": "GCA_000423765.1", "taxid": 502567, "species_taxid": 502567, "relation_to_type": "type", "validated": true, "ani": 80.7518, "matched_fragments": 112, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 80.7158, "matched_fragments": 98, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=NCTC12479", "accession": "GCA_900475445.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 80.5818, "matched_fragments": 101, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 80.3069, "matched_fragments": 89, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 80.0397, "matched_fragments": 114, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=NCTC12969", "accession": "GCA_900459295.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 79.8724, "matched_fragments": 125, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=SL1", "accession": "GCA_003172995.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 79.6614, "matched_fragments": 90, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 79.6217, "matched_fragments": 99, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=NCTC12279", "accession": "GCA_900475395.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 79.6151, "matched_fragments": 92, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=DSM 20565", "accession": "GCA_000421785.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 79.5715, "matched_fragments": 79, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.3335, "matched_fragments": 103, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 79.2824, "matched_fragments": 107, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vicugnae", "strain": "strain=SL1232", "accession": "GCA_016461705.1", "taxid": 2740579, "species_taxid": 2740579, "relation_to_type": "type", "validated": true, "ani": 79.1596, "matched_fragments": 111, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus acidominimus", "strain": "strain=CCUG 27296", "accession": "GCA_001921825.1", "taxid": 1326, "species_taxid": 1326, "relation_to_type": "type", "validated": true, "ani": 79.035, "matched_fragments": 78, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus loxodontisalivarius", "strain": "strain=DSM 27382", "accession": "GCA_016908645.1", "taxid": 1349415, "species_taxid": 1349415, "relation_to_type": "type", "validated": true, "ani": 78.9739, "matched_fragments": 142, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thoraltensis", "strain": "strain=DSM 12221", "accession": "GCA_000380145.1", "taxid": 55085, "species_taxid": 55085, "relation_to_type": "type", "validated": true, "ani": 78.962, "matched_fragments": 107, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.7924, "matched_fragments": 95, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 78.7786, "matched_fragments": 113, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000164095.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 78.6665, "matched_fragments": 86, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 13229", "accession": "GCA_002014885.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 78.6401, "matched_fragments": 88, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pharyngis", "strain": "strain=CCUG 66496", "accession": "GCA_007859195.1", "taxid": 1562651, "species_taxid": 1562651, "relation_to_type": "type", "validated": true, "ani": 78.4962, "matched_fragments": 81, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 78.3803, "matched_fragments": 89, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=ATCC 33478", "accession": "GCA_000439045.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 78.2496, "matched_fragments": 84, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=DSM 20742", "accession": "GCA_000686605.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 78.1718, "matched_fragments": 84, "total_fragments": 848, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900459405.1", "gtdb_species": "s__Streptococcus hyointestinalis", "ani": 100.0, "matched_fragments": 846, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011039275.1", "gtdb_species": "s__Streptococcus hyointestinalis_A", "ani": 93.6236, "matched_fragments": 528, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423765.1", "gtdb_species": "s__Streptococcus porci", "ani": 80.7847, "matched_fragments": 113, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000222765.1", "gtdb_species": "s__Streptococcus cristatus", "ani": 80.696, "matched_fragments": 103, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.39", "min_intra_species_ani": "95.04", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_900636575.1", "gtdb_species": "s__Streptococcus canis", "ani": 80.6218, "matched_fragments": 99, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000253155.1", "gtdb_species": "s__Streptococcus oralis_L", "ani": 80.5158, "matched_fragments": 104, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.38", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009738225.1", "gtdb_species": "s__Streptococcus sp001556435", "ani": 80.3121, "matched_fragments": 119, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.11", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 79, "status": "-" }, { "accession": "GCF_900636475.1", "gtdb_species": "s__Streptococcus anginosus", "ani": 79.7454, "matched_fragments": 85, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.16", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.78", "num_clustered_genomes": 79, "status": "-" }, { "accession": "GCA_905221455.1", "gtdb_species": "s__Streptococcus sp905221455", "ani": 79.7069, "matched_fragments": 94, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001697145.1", "gtdb_species": "s__Streptococcus anginosus_C", "ani": 79.6254, "matched_fragments": 85, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.80", "num_clustered_genomes": 41, "status": "-" }, { "accession": "GCF_003686955.1", "gtdb_species": "s__Streptococcus sp003686955", "ani": 79.2734, "matched_fragments": 107, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001171885.1", "gtdb_species": "s__Streptococcus pneumoniae_A", "ani": 79.2259, "matched_fragments": 109, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016461705.1", "gtdb_species": "s__Streptococcus vicugnae", "ani": 79.1274, "matched_fragments": 113, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905221215.1", "gtdb_species": "s__Streptococcus sp905221215", "ani": 78.999, "matched_fragments": 92, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.24", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000380145.1", "gtdb_species": "s__Streptococcus thoraltensis", "ani": 78.962, "matched_fragments": 107, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003942675.1", "gtdb_species": "s__Streptococcus oralis_BC", "ani": 78.7843, "matched_fragments": 86, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.25", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000187265.1", "gtdb_species": "s__Streptococcus equinus", "ani": 78.7774, "matched_fragments": 113, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 42, "status": "-" }, { "accession": "GCA_905221545.1", "gtdb_species": "s__Streptococcus sp905221545", "ani": 78.7141, "matched_fragments": 107, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001578795.1", "gtdb_species": "s__Streptococcus gordonii_A", "ani": 78.6281, "matched_fragments": 89, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859195.1", "gtdb_species": "s__Streptococcus pharyngis", "ani": 78.5011, "matched_fragments": 82, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902167705.1", "gtdb_species": "s__Streptococcus constellatus_A", "ani": 78.5005, "matched_fragments": 80, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003942965.1", "gtdb_species": "s__Streptococcus mitis_BH", "ani": 78.4482, "matched_fragments": 103, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015594605.1", "gtdb_species": "s__Streptococcus sp015594605", "ani": 78.3919, "matched_fragments": 162, "total_fragments": 848, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 36.284, "optimum_ph": 6.89, "genome_size": 2093253.959, "gc_content": 39.262, "coding_genes": 1944.968, "rRNA16S_genes": 4.791, "tRNA_genes": 62.087, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.943, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.056, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "hyointestinalis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }