# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_22	LOCUS_00220	sequence2:16314..17258(-)	frameshift		17335	WP_150880979.1	ISL3 family transposase	98.7	76.0	64.2
MGA_23	LOCUS_00230	sequence2:17252..17569(-)	frameshift		17335	WP_115276001.1	ISL3 family transposase	93.3	23.4	45.9
MGA_84	LOCUS_00840	sequence2:80479..82044(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	40.9	46.1	34.9
MGA_89	LOCUS_00890	sequence2:93423..94922(+)	partial			WP_158580290.1	YadA-like family protein	64.5	6.5	42.6
MGA_97	LOCUS_00970	sequence2:102970..104259(-)	partial			WP_064251577.1	ISNCY family transposase	57.3	44.8	32.3
MGA_109	LOCUS_01090	sequence2:121467..121796(+)	partial			WP_010921800.1	competence type IV pilus minor pilin ComGF	93.6	70.8	66.7
MGA_127	LOCUS_01270	sequence2:143088..143519(+)	partial			WP_000921241.1	hypothetical protein	54.5	72.9	42.3
MGA_129	LOCUS_01290	sequence2:143740..144171(+)	partial			WP_000921241.1	hypothetical protein	54.5	72.9	42.3
MGA_139	LOCUS_01390	sequence2:152544..153131(+)	partial			WP_010979043.1	ABC transporter ATP-binding protein	86.2	62.0	30.6
MGA_145	LOCUS_01450	sequence2:157956..159698(+)	partial			WP_000694240.1	transglutaminase domain-containing protein	27.8	29.4	37.6
MGA_163	LOCUS_01630	sequence2:180643..180816(+)	frameshift		180810	WP_002986345.1	glycine betaine/L-proline ABC transporter ATP-binding protein	98.2	14.1	83.9
MGA_176	LOCUS_01760	sequence2:197980..198222(+)	partial			WP_011285510.1	LPXTG-anchored collagen-like adhesin Scl2/SclB	92.5	33.4	35.7
MGA_178	LOCUS_01780	sequence2:199319..200155(+)	frameshift		199259	WP_120719018.1	IS3 family transposase	100.0	61.9	73.0
MGA_196	LOCUS_01960	sequence2:218791..218931(+)	partial			WP_000418176.1	NUDIX hydrolase	97.8	31.7	55.6
MGA_237	LOCUS_02370	sequence2:269205..270494(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.6
MGA_247	LOCUS_02470	sequence2:290492..290977(+)	frameshift		290490	WP_010921894.1	sigma-70 family RNA polymerase sigma factor	92.5	81.4	71.8
MGA_254	LOCUS_02540	sequence2:296900..298315(+)	partial			WP_003234692.1	alpha-amylase	93.6	66.9	53.6
MGA_284	LOCUS_02840	sequence2:346676..347161(+)	frameshift		346674	WP_010921894.1	sigma-70 family RNA polymerase sigma factor	92.5	81.4	71.8
MGA_372	LOCUS_03720	sequence2:424681..425262(+)	partial			WP_002983552.1	PepSY domain-containing protein	57.5	76.0	53.5
MGA_409	LOCUS_04090	sequence2:468150..468467(+)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	61.9	61.9	96.9
MGA_422	LOCUS_04220	sequence2:482702..483637(+)	partial			WP_010922534.1	DEAD/DEAH box helicase	99.4	70.1	63.8
MGA_434	LOCUS_04340	sequence2:503452..503952(+)	internal_stop_codon	503434..503436(+)		WP_002324544.1	site-specific resolvase TndX	97.0	30.2	31.7
MGA_440	LOCUS_04400	sequence2:509081..509911(+)	partial			WP_001017622.1	sensor histidine kinase	98.6	61.0	47.1
MGA_446	LOCUS_04460	sequence2:515104..515940(-)	frameshift		515999	WP_120719018.1	IS3 family transposase	100.0	61.9	73.0
MGA_454	LOCUS_04540	sequence2:519921..520160(-)	partial			WP_001267146.1	helix-turn-helix transcriptional regulator	65.8	18.2	50.9
MGA_527	LOCUS_05270	sequence2:601896..602075(+)	partial			WP_010921970.1	NUDIX domain-containing protein	84.7	31.6	78.0
MGA_530	LOCUS_05300	sequence2:604213..604890(+)	partial			WP_000623418.1	ABC transporter permease subunit	94.7	56.5	45.6
MGA_544	LOCUS_05440	sequence2:618428..623068(+)	partial			WP_002875186.1	sialidase domain-containing protein	48.5	63.6	30.9
MGA_564	LOCUS_05640	sequence2:648216..649583(+)	partial			WP_000699969.1	S8 family serine peptidase	87.5	70.8	29.7
MGA_579	LOCUS_05790	sequence2:664997..665758(-)	partial			WP_012775212.1	ISL3 family transposase	100.0	60.5	81.0
MGA_583	LOCUS_05830	sequence2:673564..674007(+)	partial			WP_000921241.1	hypothetical protein	53.1	72.9	41.0
MGA_584	LOCUS_05840	sequence2:674142..674564(+)	partial			WP_000921241.1	hypothetical protein	59.3	77.6	38.6
MGA_587	LOCUS_05870	sequence2:675127..676431(+)	partial			WP_009930426.1	DUF2974 domain-containing protein	66.1	69.1	23.9
MGA_619	LOCUS_06190	sequence2:705424..706713(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.6
MGA_645	LOCUS_06450	sequence2:727993..731139(-)	partial			WP_012047722.1	DUF3472 domain-containing protein	11.5	21.8	29.5
MGA_661	LOCUS_06610	sequence2:752064..753338(-)	partial			WP_011837107.1	ATP-binding protein	77.4	59.7	42.8
MGA_663	LOCUS_06630	sequence2:753700..753861(-)	internal_stop_codon	753877..753879(-)		WP_011837109.1	hypothetical protein	98.1	57.1	67.3
MGA_666	LOCUS_06660	sequence2:756766..757056(-)	frameshift		757145	WP_010922038.1	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	100.0	37.3	86.6
MGA_667	LOCUS_06670	sequence2:757092..757544(-)	frameshift		757145	WP_010922038.1	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	83.3	48.1	99.2
MGA_764	LOCUS_07640	sequence2:864162..864446(+)	frameshift		864570,864413,864558	WP_105158881.1	replication initiator protein A	91.5	31.6	94.2
MGA_766	LOCUS_07660	sequence2:865381..865548(+)	partial			WP_012775543.1	SAG1250 family conjugative relaxase	78.2	6.9	88.4
MGA_767	LOCUS_07670	sequence2:865545..866036(+)	internal_stop_codon	866034..866036(+),866238..866240(+)		WP_168549381.1	SAG1250 family conjugative relaxase	100.0	26.2	89.6
MGA_768	LOCUS_07680	sequence2:866244..866720(+)	internal_stop_codon	866034..866036(+),866238..866240(+)		WP_012775543.1	SAG1250 family conjugative relaxase	100.0	25.4	70.9
MGA_781	LOCUS_07810	sequence2:879037..879237(+)	frameshift,internal_stop_codon	878808..878810(+)	878930	WP_012775157.1	IS200/IS605-like element ISSsu4 family transposase	100.0	42.9	97.0
MGA_783	LOCUS_07830	sequence2:879668..879892(-)	partial			WP_002263524.1	HlyD family efflux transporter periplasmic adaptor subunit	93.2	23.0	47.8
MGA_784	LOCUS_07840	sequence2:880106..881026(-)	internal_stop_codon	880106..880108(-)		WP_000801593.1	competence pheromone export protein ComB	97.7	66.1	34.1
MGA_785	LOCUS_07850	sequence2:881044..881331(-)	frameshift		881345,881069	WP_002263352.1	peptide cleavage/export ABC transporter	92.6	11.5	70.5
MGA_786	LOCUS_07860	sequence2:881298..881540(-)	frameshift		881072,881348	WP_003082313.1	peptide cleavage/export ABC transporter	62.5	6.8	72.0
MGA_788	LOCUS_07880	sequence2:882336..882623(+)	partial			WP_000551536.1	hypothetical protein	96.8	69.2	52.2
MGA_798	LOCUS_07980	sequence2:890996..892198(+)	partial			WP_001215128.1	sensor histidine kinase	100.0	72.9	65.8
MGA_806	LOCUS_08060	sequence2:900987..901157(+)	partial			WP_011837102.1	DUF4176 domain-containing protein	94.6	53.5	52.8
MGA_809	LOCUS_08090	sequence2:901928..903535(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	43.2	48.7	35.1
MGA_820	LOCUS_08200	sequence2:912408..913697(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.6
MGA_828	LOCUS_08280	sequence2:920719..921009(+)	internal_stop_codon	920710..920712(+)		WP_164922377.1	GNAT family N-acetyltransferase	94.8	69.4	48.0
MGA_843	LOCUS_08430	sequence2:938205..938666(-)	partial			WP_002989605.1	DUF3862 domain-containing protein	99.3	73.8	68.4
MGA_864	LOCUS_08640	sequence2:959039..962521(+)	partial			WP_010989462.1	class 1 internalin InlA	11.6	15.5	34.8
MGA_865	LOCUS_08650	sequence2:963004..963519(+)	frameshift		963447	WP_172450158.1	IS3 family transposase	94.2	36.0	76.4
MGA_866	LOCUS_08660	sequence2:963618..964346(+)	frameshift		963453	WP_172450158.1	IS3 family transposase	99.6	53.9	87.6
MGA_878	LOCUS_08780	sequence2:975573..975803(+)	partial			WP_002680014.1	DUF3847 domain-containing protein	67.1	61.4	78.4
MGA_958	LOCUS_09580	sequence2:1062635..1063075(+)	partial			WP_000700451.1	pneumococcal histidine triad protein PhtA	88.4	16.2	47.7
MGA_990	LOCUS_09900	sequence2:1092468..1092710(-)	frameshift,internal_stop_codon	1092369..1092371(-)	1092500,1092311	WP_010922322.1	sodium ion-translocating decarboxylase subunit beta	90.0	19.1	80.6
MGA_1000	LOCUS_10000	sequence2:1103361..1103846(-)	frameshift		1103935	WP_000078816.1	DUF1430 domain-containing protein	100.0	63.1	91.9
MGA_1001	LOCUS_10010	sequence2:1103900..1105363(-)	frameshift		1103935	WP_000732428.1	bacteriocin-associated integral membrane family protein	96.1	69.4	29.6
MGA_1003	LOCUS_10030	sequence2:1106229..1107080(-)	partial			WP_003703465.1	thioredoxin family protein	86.2	72.4	34.8
MGA_1012	LOCUS_10120	sequence2:1114091..1114369(-)	partial			WP_010922310.1	hypothetical protein	85.9	64.8	36.7
MGA_1110	LOCUS_11100	sequence2:1213191..1214480(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.0
MGA_1134	LOCUS_11340	sequence2:1238909..1239085(-)	partial			WP_000048058.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_1144	LOCUS_11440	sequence2:1255211..1255846(-)	partial			WP_011461690.1	DUF2275 domain-containing protein	38.9	22.0	32.9
MGA_1146	LOCUS_11460	sequence2:1256664..1260377(-)	partial			WP_164925492.1	pullulanase	82.2	48.3	68.5
MGA_1147	LOCUS_11470	sequence2:1260857..1261234(+)	partial			WP_013529345.1	IS1595 family transposase	92.8	38.2	34.4
MGA_1150	LOCUS_11500	sequence2:1262221..1262406(+)	frameshift		1262394	WP_009994586.1	DUF6036 family nucleotidyltransferase	95.1	40.8	69.0
MGA_1153	LOCUS_11530	sequence2:1264299..1265909(-)	partial			WP_012775646.1	IdeS family IgM protease	59.1	28.6	29.0
MGA_1196	LOCUS_11960	sequence2:1320943..1321704(+)	partial			WP_012775212.1	ISL3 family transposase	100.0	60.5	81.0
MGA_1228	LOCUS_12280	sequence2:1353665..1354717(-)	partial			WP_158580290.1	YadA-like family protein	34.0	2.5	58.4
MGA_1242	LOCUS_12420	sequence2:1370923..1372008(-)	partial			WP_010877387.1	radical SAM protein	71.5	79.6	26.2
MGA_1243	LOCUS_12430	sequence2:1371962..1372993(-)	partial			WP_048064511.1	radical SAM protein	80.5	62.2	28.9
MGA_1263	LOCUS_12630	sequence2:1392063..1394168(-)	partial			WP_011861367.1	DEAD/DEAH box helicase family protein	100.0	23.4	90.4
MGA_1264	LOCUS_12640	sequence2:1394228..1395532(-)	partial			WP_011860792.1	DEAD/DEAH box helicase family protein	99.3	14.8	85.4
MGA_1267	LOCUS_12670	sequence2:1397317..1398438(-)	partial			WP_011860791.1	DNA topoisomerase 3	100.0	65.7	92.0
MGA_1268	LOCUS_12680	sequence2:1398575..1398730(-)	internal_stop_codon	1398575..1398577(-)		WP_011860781.1	replication initiator protein A	100.0	19.7	96.1
MGA_1303	LOCUS_13030	sequence2:1439056..1440219(+)	partial			WP_010922721.1	streptodornase B	64.6	76.0	39.2
MGA_1312	LOCUS_13120	sequence2:1450098..1450538(-)	partial			WP_038431436.1	pseudouridine synthase	97.9	60.1	67.8
MGA_1316	LOCUS_13160	sequence2:1454593..1456098(-)	partial			WP_012027720.1	transglutaminase domain-containing protein	81.0	37.6	32.0
MGA_1324	LOCUS_13240	sequence2:1463792..1464307(+)	frameshift		1464235	WP_172450158.1	IS3 family transposase	94.2	36.0	76.4
MGA_1325	LOCUS_13250	sequence2:1464406..1465134(+)	frameshift		1464241	WP_172450158.1	IS3 family transposase	99.6	53.9	87.6
MGA_1441	LOCUS_14400	sequence2:1584130..1587318(-)	partial			WP_211478145.1	type VII secretion protein EsaA	48.0	41.7	22.4
MGA_1445	LOCUS_14440	sequence2:1592274..1592684(-)	frameshift		1592294	WP_010921942.1	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	94.1	79.0	78.1
MGA_1464	LOCUS_14630	sequence2:1614675..1614962(-)	partial			WP_002262692.1	methylated-DNA--[protein]-cysteine S-methyltransferase	94.7	54.9	55.6
MGA_1482	LOCUS_14810	sequence2:1635800..1637047(-)	partial			WP_001226570.1	ABC transporter permease	73.3	71.2	29.5
MGA_1488	LOCUS_14870	sequence2:1642687..1643445(+)	partial			WP_002994282.1	hypothetical protein	57.5	60.8	42.5
MGA_1520	LOCUS_15190	sequence2:1675146..1675529(-)	partial			WP_002988815.1	ribosome maturation factor RimP	100.0	71.3	86.6
MGA_1566	LOCUS_15650	sequence2:1719420..1720166(-)	partial			WP_010948344.1	DUF1566 domain-containing protein	61.3	36.3	34.6
MGA_1601	LOCUS_16000	sequence2:1766935..1768344(-)	partial			WP_011837107.1	ATP-binding protein	70.1	59.7	44.0
MGA_1607	LOCUS_16060	sequence2:1770931..1772220(+)	partial			WP_064251577.1	ISNCY family transposase	57.3	44.8	32.3
MGA_1616	LOCUS_16150	sequence2:1781569..1781733(-)	frameshift,internal_stop_codon	1781569..1781571(-)	1781713	WP_002263544.1	type II toxin-antitoxin system HicB family antitoxin	87.0	37.6	74.5
MGA_1698	LOCUS_16970	sequence2:1866468..1866983(-)	frameshift		1866990	WP_000795063.1	PTS transporter subunit IIBC	88.3	20.8	51.0
MGA_1718	LOCUS_17170	sequence2:1881210..1882499(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.3
MGA_1742	LOCUS_17410	sequence2:1906428..1907510(+)	partial			WP_000117962.1	tail fiber protein	11.4	6.9	63.6
MGA_1744	LOCUS_17430	sequence2:1908576..1909676(-)	partial			WP_011016983.1	ATP/GTP-binding protein	34.2	30.2	48.4
MGA_1745	LOCUS_17440	sequence2:1910303..1910782(-)	internal_stop_codon	1910303..1910305(-)		WP_005680466.1	reverse transcriptase/maturase family protein	96.2	25.9	38.0
MGA_1747	LOCUS_17460	sequence2:1911992..1912435(-)	partial			WP_012775531.1	hypothetical protein	91.2	63.2	68.7
MGA_1752	LOCUS_17510	sequence2:1916611..1917900(+)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.0
MGA_1755	LOCUS_17540	sequence2:1918807..1920150(-)	partial			WP_001071181.1	SNF2-related protein	99.8	19.6	86.3
MGA_1756	LOCUS_17550	sequence2:1920288..1921085(-)	internal_stop_codon	1921116..1921118(-)		WP_011461915.1	reverse transcriptase domain-containing protein	98.9	44.0	35.6
MGA_1757	LOCUS_17560	sequence2:1921116..1922066(-)	internal_stop_codon	1921116..1921118(-)		WP_005680466.1	reverse transcriptase/maturase family protein	100.0	54.0	47.4
MGA_1758	LOCUS_17570	sequence2:1922564..1927648(-)	frameshift		1927692	WP_001071181.1	SNF2-related protein	99.8	74.1	71.5
MGA_1759	LOCUS_17580	sequence2:1927690..1928034(-)	frameshift		1927692	WP_001071181.1	SNF2-related protein	100.0	5.0	64.0
MGA_1760	LOCUS_17590	sequence2:1928250..1928636(-)	internal_stop_codon	1928250..1928252(-)		WP_012775523.1	hypothetical protein	100.0	69.9	53.1
MGA_1761	LOCUS_17600	sequence2:1928648..1931248(-)	partial			WP_012775602.1	GbpC/Spa domain-containing protein	99.9	53.0	73.8
MGA_1767	LOCUS_17660	sequence2:1938565..1939533(-)	partial			WP_044682503.1	ATPase AAA	91.0	37.4	95.6
MGA_1769	LOCUS_17680	sequence2:1941741..1943228(-)	partial			WP_044682503.1	ATPase AAA	98.6	62.6	82.7
MGA_1771	LOCUS_17700	sequence2:1943600..1943806(-)	internal_stop_codon	1943840..1943842(-)		WP_000980125.1	conjugal transfer protein TrbL	100.0	23.9	82.4
MGA_1772	LOCUS_17710	sequence2:1943840..1944454(-)	internal_stop_codon	1943840..1943842(-)		WP_011922462.1	conjugal transfer protein TrbL	100.0	71.1	78.9
MGA_1774	LOCUS_17730	sequence2:1944830..1945336(-)	frameshift,internal_stop_codon	1944829..1944831(-)	1945374	WP_012775517.1	type IV secretory system conjugative DNA transfer family protein	100.0	27.8	91.1
MGA_1775	LOCUS_17740	sequence2:1945351..1946547(-)	frameshift		1945377	WP_012775517.1	type IV secretory system conjugative DNA transfer family protein	99.5	65.6	88.2
MGA_1783	LOCUS_17820	sequence2:1951092..1951280(-)	partial			WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	80.6	32.5	84.0
MGA_1784	LOCUS_17830	sequence2:1951211..1951414(-)	partial			WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	79.1	34.4	69.8
MGA_1785	LOCUS_17840	sequence2:1951675..1951839(-)	partial			WP_011836383.1	NUDIX hydrolase	83.3	30.0	62.2
MGA_1792	LOCUS_17910	sequence2:1958600..1959946(+)	partial			WP_001043090.1	LPXTG cell wall anchor domain-containing protein	60.0	55.9	35.7
MGA_1794	LOCUS_17930	sequence2:1961284..1961643(-)	frameshift		1961644	WP_010906104.1	histidine phosphatase family protein	94.1	58.7	50.0
MGA_1795	LOCUS_17940	sequence2:1961633..1961890(-)	frameshift		1961641	WP_003579561.1	histidine phosphatase family protein	75.3	33.9	43.8
MGA_1815	LOCUS_18140	sequence2:1983831..1987949(-)	partial			WP_000610259.1	MSCRAMM family adhesin SdrE	56.7	65.4	23.5
MGA_1831	LOCUS_18300	sequence2:2002746..2003183(-)	partial			WP_010921804.1	hypothetical protein	54.5	77.5	51.9
MGA_1832	LOCUS_18310	sequence2:2003213..2003887(-)	partial			WP_012775187.1	CPBP family intramembrane metalloprotease	63.4	62.0	43.7
MGA_1849	LOCUS_18480	sequence2:2018279..2018851(-)	partial			WP_003577315.1	phospholipase A2 family protein	64.2	62.1	35.4
MGA_1868	LOCUS_18670	sequence2:2040003..2041292(-)	partial			WP_064251564.1	ISNCY family transposase	76.5	62.5	29.6
MGA_1870	LOCUS_18690	sequence2:2043727..2044701(-)	partial			WP_011392515.1	MFS transporter	87.7	69.9	27.3
MGA_1871	LOCUS_18700	sequence2:2045573..2047381(+)	partial			WP_001035315.1	pneumococcal surface protein A	61.6	58.8	21.0
MGA_1877	LOCUS_18760	sequence2:2052501..2054774(+)	partial			WP_002263841.1	ABC transporter permease	65.1	58.9	26.5
MGA_1883	LOCUS_18820	sequence2:2060056..2061111(+)	partial			WP_011837698.1	DUF1700 domain-containing protein	23.9	41.2	41.7
MGA_1889	LOCUS_18880	sequence2:2065476..2065679(-)	frameshift		2065487	WP_010922771.1	ArpU family transcriptional regulator	94.0	50.4	75.0
MGA_1890	LOCUS_18890	sequence2:2065739..2066017(-)	frameshift,internal_stop_codon	2065705..2065707(-)	2065741	WP_010922770.1	DUF1492 domain-containing protein	100.0	76.7	80.4